string getCommandName() { return "count.groups"; }
string getCommandCategory() { return "Sequence Processing"; }
string getHelpString();
+ string getOutputPattern(string);
string getCitation() { return "http://www.mothur.org/wiki/Count.groups"; }
string getDescription() { return "counts the number of sequences in each group"; }
private:
- string sharedfile, groupfile, outputDir, groups, accnosfile;
+ string sharedfile, groupfile, countfile, outputDir, groups, accnosfile;
bool abort;
vector<string> Groups;
-
- void readAccnos();
+ vector<string> outputNames;
};
#endif