inFASTA.seekg(pDataArray->start-1); pDataArray->m->gobble(inFASTA);
}
- pDataArray->count = pDataArray->end;
-
//make classify
Classify* myclassify;
string outputMethodTag = pDataArray->method + ".";
if (pDataArray->m->control_pressed) { delete myclassify; return 0; }
- int count = 0;
+ pDataArray->count = 0;
for(int i = 0; i < pDataArray->end; i++){ //end is the number of sequences to process
if (pDataArray->m->control_pressed) { delete myclassify; return 0; }
if (myclassify->getFlipped()) { outAcc << candidateSeq->getName() << endl; }
- count++;
+ pDataArray->count++;
}
delete candidateSeq;
//report progress
- if((count) % 100 == 0){ pDataArray->m->mothurOut("Processing sequence: " + toString(count)); pDataArray->m->mothurOutEndLine(); }
+ if((pDataArray->count) % 100 == 0){ pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(pDataArray->count)+"\n"); }
}
//report progress
- if((count) % 100 != 0){ pDataArray->m->mothurOut("Processing sequence: " + toString(count)); pDataArray->m->mothurOutEndLine(); }
+ if((pDataArray->count) % 100 != 0){ pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(pDataArray->count)+"\n"); }
delete myclassify;
inFASTA.close();