typedef struct {
int rank0, perm_rank; // NB: perm_rank is always set to -1 by bcf_p1_cal()
+ int ac; // ML alternative allele count
double f_exp, f_flat, p_ref_folded, p_ref, p_var_folded, p_var;
double cil, cih;
- double cmp[3], p_chi2; // used by contrast2()
+ double cmp[3], p_chi2, lrt; // used by contrast2()
} bcf_p1rst_t;
#define MC_PTYPE_FULL 1
int bcf_p1_set_n1(bcf_p1aux_t *b, int n1);
void bcf_p1_set_folded(bcf_p1aux_t *p1a); // only effective when set_n1() is not called
- int bcf_em1(const bcf1_t *b, int n1, int flag, double x[9]);
+ int bcf_em1(const bcf1_t *b, int n1, int flag, double x[10]);
#ifdef __cplusplus
}