//for each word
for (int i = 0; i < numKmers; i++) {
+ //m->mothurOut("[DEBUG]: kmer = " + toString(i) + "\n");
+
if (m->control_pressed) { break; }
#ifdef USE_MPI
}
}
+ if (m->debug) { m->mothurOut("[DEBUG]: about to generateWordPairDiffArr\n"); }
generateWordPairDiffArr();
+ if (m->debug) { m->mothurOut("[DEBUG]: done generateWordPairDiffArr\n"); }
//save probabilities
if (rdb->save) { rdb->wordGenusProb = wordGenusProb; rdb->WordPairDiffArr = WordPairDiffArr; }
}
}
- if (queryKmers.size() == 0) { m->mothurOut(seq->getName() + "is bad."); m->mothurOutEndLine(); simpleTax = "unknown;"; return "unknown;"; }
+ if (queryKmers.size() == 0) { m->mothurOut(seq->getName() + " is bad. It has no kmers of length " + toString(kmerSize) + "."); m->mothurOutEndLine(); simpleTax = "unknown;"; return "unknown;"; }
int index = getMostProbableTaxonomy(queryKmers);