--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -6,7 +6,7 @@
 # ==========================
 
 add_subdirectory( api )
-add_subdirectory( third_party )
+# add_subdirectory( third_party )
 add_subdirectory( toolkit )
 add_subdirectory( utils )
 
--- a/src/third_party/CMakeLists.txt
+++ b/src/third_party/CMakeLists.txt
@@ -6,4 +6,4 @@
 # ==========================
 
 # list third-party subdirectories to build in
-add_subdirectory( jsoncpp )
+# add_subdirectory( jsoncpp )
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -38,6 +38,8 @@
 set( EXECUTABLE_OUTPUT_PATH "${CMAKE_SOURCE_DIR}/bin" )
 set( LIBRARY_OUTPUT_PATH    "${CMAKE_SOURCE_DIR}/lib" )
 
+SET(CMAKE_INSTALL_RPATH "/usr/lib/bamtools")
+
 # define compiler flags for all code
 set( CMAKE_BUILD_TYPE Release )
 add_definitions( -Wall -D_FILE_OFFSET_BITS=64 )