# Martin Asser Hansen (mail@maasha.dk) Copyright (C) 2008 - All right reserved

CC      = gcc
# Cflags = -Wall -Werror
Cflags = -Wall -Werror -g -pg # for gprof

INC_DIR  = inc/
LIB_DIR  = lib/
TEST_DIR = test/

INC = -I $(INC_DIR)
LIB = -lm $(LIB_DIR)*.o

all: libs utest bed_sort bipartite_scan bipartite_decode fasta_count repeat-O-matic

libs:
	cd $(LIB_DIR) && ${MAKE} all

utest:
	cd $(TEST_DIR) && ${MAKE} all

bed_sort: bed_sort.c
	$(CC) $(Cflags) $(INC) $(LIB) bed_sort.c -o bed_sort

bipartite_scan: bipartite_scan.c
	$(CC) $(Cflags) $(INC) $(LIB) bipartite_scan.c -o bipartite_scan

bipartite_decode: bipartite_decode.c
	$(CC) $(Cflags) $(INC) $(LIB) bipartite_decode.c -o bipartite_decode

fasta_count: fasta_count.c
	$(CC) $(Cflags) $(INC) $(LIB) fasta_count.c -o fasta_count

repeat-O-matic: repeat-O-matic.c
	$(CC) $(Cflags) $(INC) $(LIB) repeat-O-matic.c -o repeat-O-matic

clean:
	cd $(LIB_DIR) && ${MAKE} clean
	cd $(TEST_DIR) && ${MAKE} clean
	rm bed_sort
	rm bipartite_scan
	rm bipartite_decode
	rm fasta_count
	rm repeat-O-matic