Author:         Martin Asser Hansen - Copyright (C) - All rights reserved

Contact:        mail@maasha.dk

Date:           August 2007

License:        GNU General Public License version 2 (http://www.gnu.org/copyleft/gpl.html)

Description:    Transliterate chars from sequences in stream.

Usage:          ... | $script [options]

Options:   [-s <chars> | --search=<chars>]     -  String of chars to locate and replace
Options:   [-r <chars> | --replace=<chars>]    -  String of chars for replacing
Options:   [-d <chars> | --delete=<chars>]     -  String of chars to delete
Options:   [-I <file>  | --stream_in=<file>]   -  Read input from stream file  -  Default=STDIN
Options:   [-O <file>  | --stream_out=<file>]  -  Write output to stream file  -  Default=STDOUT

Examples:   ... | $script -s Uu -r Tt  -  Replacing u with t as in converting RNA to DNA.
Examples:   ... | $script -d '.~-'     -  Removing indels.

Keys in: SEQ  -  Sequence.