#!/bin/bash

source "$BP_DIR/bp_test/lib/test.sh"

run "$bp -f CGATCGAGCT -r AGTCAGTCAT -I $in -O $tmp"
assert_no_diff $tmp $out.1
clean

run "$bp -f CGATCGAGCT -r AGTCAGTCAT -m 1 -I $in -O $tmp"
assert_no_diff $tmp $out.2
clean

run "$bp -F CGATCGAGCT -r AGTCAGTCAT -I $in -O $tmp"
assert_no_diff $tmp $out.3
clean

run "$bp -f CGATCGAGCT -R AGTCAGTCAT -I $in -O $tmp"
assert_no_diff $tmp $out.4
clean

run "$bp -F CGATCGAGCT -R AGTCAGTCAT -I $in -O $tmp"
assert_no_diff $tmp $out.5
clean