#!/bin/bash

source "$BP_DIR/bp_test/lib/test.sh"

run "$bp -I $in -p SEQ -O $tmp"
assert_no_diff $tmp $out.1
clean

run "$bp -I $in -p SEQ,COUNT -O $tmp"
assert_no_diff $tmp $out.2
clean

run "$bp -I $in -P $in.pat -O $tmp"
assert_no_diff $tmp $out.3
clean

run "$bp -I $in -p SEQ -i -O $tmp"
assert_no_diff $tmp $out.4
clean

run "$bp -I $in -p SEQ -K -O $tmp"
assert_no_diff $tmp $out.5
clean

run "$bp -I $in -p SEQ -V -O $tmp"
assert_no_diff $tmp $out.6
clean

run "$bp -I $in -p SEQ -k PAT -O $tmp"
assert_no_diff $tmp $out.7
clean

run "$bp -I $in -r a -k SEQ -O $tmp"
assert_no_diff $tmp $out.8
clean

run "$bp -I $in -r a -k SEQ -c -O $tmp"
assert_no_diff $tmp $out.9
clean

run "$bp -I $in -e 'SEQ_LEN<10' -O $tmp"
assert_no_diff $tmp $out.10
clean