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### Stuff that enables biopieces.

### BP_DIR, BP_DATA and BP_TMP should all be set in ~/.bashrc
### see http://code.google.com/p/biopieces/wiki/Installation

### The below bin directory should hold biopiece executables - regardsles of programming language.

export BP_BIN="$BP_DIR/bp_bin"              # Directory with biopiece executables.

### The following directories hold the biopiece libraries, modules, gems, etc - one per programming language.

export BP_PERL="$BP_DIR/code_perl"          # Direcotry with Perl code.
export BP_C="$BP_DIR/code_c"                # Direcotry with c code.
export BP_PYTHON="$BP_DIR/code_python"      # Direcotry with Pyton code.
export BP_RUBY="$BP_DIR/code_ruby"          # Direcotry with Ruby code.

### Here we add the biopiece variable to the existing PATH and PERL5LIB variables.

export PATH="$PATH:$BP_BIN"  
export PERL5LIB="$PERL5LIB:$BP_PERL"

### Alias allowing power scripting with biopieces.

alias bioscript="perl -MMaasha::Biopieces=read_stream,get_record,put_record -e"


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### Martin A. Hansen, June 2008