#!/usr/bin/env ruby

require 'Maasha/biopieces'
require 'getoptlong'

options = GetoptLong.new(
    [ '--help',       '-?', GetoptLong::NO_ARGUMENT ],
    [ '--stream_in',  '-I', GetoptLong::REQUIRED_ARGUMENT ],
    [ '--stream_out', '-O', GetoptLong::REQUIRED_ARGUMENT ],
    [ '--verbose',    '-v', GetoptLong::NO_ARGUMENT ]
)

if ARGV.length == 0 then
    biopiece = $0.split( "/" ).last
    exec "print_wiki --data_in #{ ENV[ 'BP_DIR' ] }/bp_usage/#{ biopiece }.wiki"
end

options.each do | opt, arg |
    puts "option: #{ opt }   argument: #{ arg }"

    case opt
        when '--help'
            biopiece = $0.split( "/" ).last
            exec "print_wiki --data_in #{ ENV[ 'BP_DIR' ] }/bp_usage/#{ biopiece }.wiki --help"
        when '--stream_in'
            puts "Stream in"
            stream = File.open( arg )
        when '--stream_out'
            puts "Stream out"
        when '--verbose'
            puts "blababnlbalbalbalbalab"
    end
end

bp_stream = BioPieces.new( "test.stream" )

puts bp_stream.record_get