1 #ifndef alnheuristics_h
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2 #define alnheuristics_h
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9 unsigned HSPFinderWordLength;
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12 float XDropG; // GappedBlast default
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13 float XDropU; // UngappedBlast default
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14 float XDropUG; // UngappedBlast called by GappedBlast
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16 unsigned MinGlobalHSPLength;
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19 void InitFromCmdLine(const AlnParams &AP);
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20 void InitGlobalFull();
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22 bool IsGlobalFull() const
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24 return MinGlobalHSPLength == 0 && BandRadius == 0;
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29 #endif // alnheuristics_h
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