2 #emacs: -*- mode: shell-script; c-basic-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-
3 #ex: set sts=4 ts=4 sw=4 et:
9 cfg_dir=/etc/neurodebian/guest/setupwizard_done
10 success_flag=$cfg_dir/setupwizard_done
11 nd_icon=/usr/share/pixmaps/neurodebian.svg
12 icon_opt="--window-icon=$nd_icon"
15 if [ ! -e $success_flag ]; then
19 if [ $first_run -eq 1 ]; then
20 zenity --info $icon_opt --title="NeuroDebian Setup Wizard" \
21 --text="Welcome to the NeuroDebian virtual machine!
23 This is the first time you have started this virtual machine. We will now perform a few simple steps to finalize its configuration. This includes upgrading the system to the latest available versions and installing additional software packages upon your request."
26 if ! zenity --question $icon_opt --title="NeuroDebian Setup Wizard" \
27 --text="The setup procedure requires network access to download packages from the Debian archive. If you do not have network access right now, you can re-start this wizard at any time from the NeuroDebian menu. If you proceed you may have to enter the superuser password with is by default 'neurodebian'.
29 Do you want to proceed with updating the system?
37 sudo update-software-center --debug 2>&1 | \
38 zenity $icon_opt --title="Updating Software Center Repository" \
39 --progress --pulsate --auto-close --auto-kill
41 popconf=/etc/popularity-contest.conf
42 if [ ! -e "$popconf" ] || grep -q -e '^PARTICIPATE.*no' "$popconf" ;
44 zenity --info $icon_opt --title="NeuroDebian Setup Wizard" \
45 --text="You will now be given the choice to participate in the package survey. If enabled, a list of installed packages will be anonymously sent to Debian (http://popcon.debian.org). Your participation is important for two reasons:
47 1) Popular packages receive more attention from developers, bugs are fixed faster and updates are provided quicker.
48 2) User statistics can help research software developers to acquire funding for continued development."
50 if [ -e "$popconf" ] ; then
51 # just reconfigure so user could get a chance to participate
52 sudo DEBIAN_FRONTEND=gnome dpkg-reconfigure popularity-contest
54 # install, but do not fail if something goes wrong
55 nd-autoinstall popularity-contest /etc/popularity-contest.conf || true
59 # install custom filter for synaptics
60 if [ $first_run -eq 1 ]; then
61 sudo mkdir -p /root/.synaptic
62 sudo bash -c 'cat << EOT >> /root/.synaptic/filters
63 filter "NeuroDebian" {
75 Origin; "neuro.debian.net"; false;
76 Maintainer; "team@neuro.debian.net"; false;
87 # essential things are done -- let's mark sucess
88 sudo bash -c "mkdir -p $cfg_dir && touch $success_flag"
91 if ! grep -q '/etc/fsl/fsl.sh' $HOME/.profile && \
92 zenity --question $icon_opt --title="FSL/AFNI Environments" \
93 --text="Packages, such as AFNI and FSL, provide large collections of command line tools which are available from their private directories, and require custom environment variables to be set for proper functioning. Usually you need to source /etc/fsl/fsl.sh or /etc/afni/afni.sh in your environments.
95 Do you want to get those files, if available, sourced automatically for your environment?
97 for t in fsl afni cmtk freesurfer; do
99 grep -q -e "$cf" $HOME/.profile || \
100 echo "[ -e \"$cf\" ] && . $cf" >> $HOME/.profile
104 # create symlink to shared folder into homedir
105 # note: -e check would exit 1 if link is broken
106 # ln -f is used for further robustness
107 [ ! -L $HOME/host ] && ln -sf /media/sf_host $HOME/host
110 # we need to package python-mvpa2-tutorial-data for PyMVPA
111 packages=$(zenity --list $icon_opt --checklist --column="Install" --column="Description" \
112 --column="Package Name" --print-column=3 --hide-column=3 --hide-header \
113 --separator=' ' --text="Please select any additional component that shall be installed.
115 Please note that this selection will not affect packages already installed
116 on the system. No installed packages will be reinstalled or removed, only
117 additional components will be installed." \
118 FALSE "Emacs" "emacs" \
119 FALSE "GNU Image Manipulation Program (Gimp)" "gimp" \
120 FALSE "Octave" "octave,qtoctave" \
121 FALSE "OpenOffice.org" "openoffice.org" \
122 FALSE "PyMVPA" "ipython,python-mvpa2,python-mvpa2-doc,spyder" \
123 FALSE "R" "r-recommended" \
124 FALSE "Scientific Python" "ipython,python-scipy,python-matplotlib,spyder,python-pandas" \
125 FALSE "TeX Live" "texlive" \
126 FALSE "Adobe Flash browser plugin" "flashplugin-nonfree" \
129 if [ -n "$packages" ]; then
130 for pkgs in $packages; do
131 nd-autoinstall -f -p "${pkgs//,/ }" true
136 zenity --info $icon_opt --text="Wizard has finished."
139 x-www-browser http://neuro.debian.net/vm_welcome.html &