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1
2 Scientific software usage in neuroscience research
3 ==================================================
4
5 This survey should take about five minutes. Immediately after submission you
6 will be presented with some statistics on previous responses. Please try to
7 answer as many questions as you can, but don't worry if you cannot answer all
8 of them. *You need to have javascript enabled in your browser for this survey.*
9 For feedback email team@neuro.debian.net
10
11 .. raw:: html
12
13    <script type="text/javascript" src="../_static/jquery.js"></script> 
14    <script type="text/javascript" src="jquery.form.js"></script> 
15
16    <script type="text/javascript">
17    // prepare the form when the DOM is ready
18    $(document).ready(function() {
19        var options = {
20            beforeSubmit:  displayStatus,
21            success:       showResponse,  // post-submit callback
22            // other available options:
23            url: "/cgi-bin/surveycollector.cgi",
24            type: "post",
25            dataType:  "json",
26            clearForm: false,
27            resetForm: false
28        };
29
30        $('#nss_survey').submit(function() {
31            $(this).ajaxSubmit(options);
32            // !!! Important !!!
33            // always return false to prevent standard browser submit and page navigation
34            return false;
35        }); 
36    }); 
37
38    // pre-submit callback 
39    function displayStatus(formData, jqForm, options) { 
40        $('#server_response').html("<emph>Sending survey data. This may take a few moments...</emph>");
41        return true; 
42    } 
43
44    function showResponse(data, statusText, xhr, $form)  {
45        // reset form if server reports success
46        if (data.success == true) {
47            $('#nss_survey').resetForm();
48            $('#submit_button').hide();
49            $('#server_response').html("<p><em>Thanks for participating in this survey. Scroll down to see the statistics.</em></p>" + data.results)
50        } else {
51            $('#server_response').html("");
52            alert(data.message);
53        }
54    }
55    </script>
56    <form id="nss_survey" action="/cgi-bin/surveycollector.cgi" method="post">
57
58
59 Personal background
60 -------------------
61
62 .. raw:: html
63
64    <table>
65    <tr class="oddrow">
66    <td>
67
68 Which country are you working in?
69
70 .. raw:: html
71
72    </td><td class="response">
73
74 .. raw:: html
75    :file: select_country.inc
76
77 .. raw:: html
78
79    </td></tr><tr><td>
80
81 Where are you working?
82
83 .. raw:: html
84
85    </td><td class="response">
86    <select name="bg_employer" size="1">
87    <option value="none" selected="selected" label="Select an option">Select an option</option>
88    <option value="edu_priv" label="Higher education (privately funded)">Higher education (privately funded)</option>
89    <option value="edu_pub" label="Higher education (publicly funded)">Higher education (publicly funded)</option>
90    <option value="research_priv" label="Research institution (privately funded)">Research institution (privately funded)</option>
91    <option value="research_pub" label="Research institution (publicly funded)">Research institution (publicly funded)</option>
92    <option value="company" label="Company">Company</option>
93    </select>
94    </td></tr><tr class="oddrow"><td>
95
96 What is your position?
97
98 .. raw:: html
99
100    </td><td class="response">
101    <select name="bg_position" size="1">
102    <option value="none" selected="selected" label="Select an option">Select an option</option>
103    <option value="undergrad" label="Undergraduate student">Undergraduate student</option>
104    <option value="graduate" label="PhD student">PhD student</option>
105    <option value="postdoc" label="Postdoc">Postdoc</option>
106    <option value="professor" label="Professor/Supervisor">Professor/Supervisor</option>
107    <option value="ra" label="Research assistant">Research assistant</option>
108    <option value="researcher" label="Other researcher">Other researcher</option>
109    <option value="sysadmin" label="System administrator">System administrator</option>
110    </select>
111    </td></tr><tr><td>
112
113 What type of data are you working with? Please check all items that apply.
114
115 .. raw:: html
116
117    </td><td class="response">
118    <table><tr><td>
119    <input type="checkbox" name="bg_datamod" value="behav" />Behavioral<br />
120    <input type="checkbox" name="bg_datamod" value="genetic" />Genetic<br />
121    <input type="checkbox" name="bg_datamod" value="mri" />MRI/fMRI/DTI<br />
122    <input type="checkbox" name="bg_datamod" value="meeg" />EEG/MEG<br />
123    <input type="checkbox" name="bg_datamod" value="pet" />PET/SPECT<br />
124    </td><td>
125    <input type="checkbox" name="bg_datamod" value="ephys" />Electrophysiology<br />
126    <input type="checkbox" name="bg_datamod" value="spectro" />Microspectroscopy<br />
127    <input type="checkbox" name="bg_datamod" value="simulation" />Computational modeling/Simulations<br />
128    <input type="checkbox" name="bg_datamod" value="otherdm" />
129    <input name="bg_datamod_other" type="text" size="20" maxlength="40">
130    </td></tr></table>
131    </td></tr><tr class="oddrow"><td>
132
133 Are you developing software that is intended to be used by other researchers?
134
135 .. raw:: html
136
137    </td><td class="response">
138    <span><input type="radio" name="bg_developer" value="yes" />Yes</span>
139    <span><input type="radio" name="bg_developer" value="no" checked="checked" />No</span>
140    </td>
141    </tr>
142    </table>
143
144 Personal scientific software environment
145 ----------------------------------------
146
147 Here are a few questions about your personal scientific software environment
148 for research activities like data acquisition, computational modeling, and data
149 analysis. You might be running this on your laptop, desktop, personal
150 workstation or any other machine where **you decide** what software you are
151 using, and you typically also have permission to **install it yourself**.  If
152 you are operating different environments, please describe the one that you find
153 most productive for your research purposes. If you don't have a machine that
154 you administer yourself, instead, please indicate what kind of scientific
155 software environment you would like to be doing your research in.
156
157 .. raw:: html
158
159    <table>
160    <tr class="oddrow">
161    <td>
162
163 What fraction of your research activity time do you spend in this software
164 environment as opposed to any other environment that you might have access to?
165
166 .. raw:: html
167
168    </td><td class="response">
169    <select name="pers_time" size="1">
170    <option value="none" selected="selected" label="Select an option">Select an option</option>
171    <option value="notime" label="None/I don't have this environment">None/I don't have this environment</option>
172    <option value="little" label="Less then half of the time">Less then half of the time</option>
173    <option value="most" label="More than half of the time">More than half of the time</option>
174    <option value="always" label="All of the time">All of the time</option>
175    </select>
176    </td></tr><tr><td>
177
178 What type of hardware are you using?
179
180 .. raw:: html
181
182    </td><td class="response">
183    <select name="pers_hardware" size="1">
184    <option value="none" selected="selected" label="Select an option">Select an option</option>
185    <option value="laptop" label="Laptop/Portable device">Laptop/Portable device</option>
186    <option value="desktop" label="Commodity desktop">Commodity desktop</option>
187    <option value="workstation" label="High-performance workstation">High-performance workstation</option>
188    <option value="cluster" label="Compute cluster">Compute cluster</option>
189    <option value="grid" label="Grid/Cloud-computing facility">Grid/Cloud-computing facility</option>
190    </select>
191    </td></tr><tr class="oddrow"><td>
192
193 What operating system is this environment running on?
194
195 .. raw:: html
196
197    </td><td class="response">
198    <select name="pers_os" size="1">
199
200 .. raw:: html
201    :file: select_os_options.inc
202
203 .. raw:: html
204
205    </select>
206    </td></tr><tr><td>
207
208 How much time do you spend each month on maintaining this environment?  This
209 includes the time spent on operating system (security) upgrades, as well as
210 installing and updating scientific software.
211
212 .. raw:: html
213
214    </td><td class="response">
215    <input name="pers_maint_time" type="text" size="3" maxlength="3"> hours per month
216    </td>
217    </tr>
218    </table>
219
220 ---------------------------------------------------------------
221
222 Please indicate how much you agree to the following statements.
223
224 .. raw:: html
225
226    <table>
227    <tr><th colspan="2" style="text-align:left;font-weight:normal">
228
229 *I prefer this particular scientific software environment because ...*
230
231 .. raw:: html
232
233    </th></tr><tr class="oddrow">
234    <td class="task">
235
236 ... the developers of an important research software recommend it
237
238 .. raw:: html
239
240    </td><td class="response">
241    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r1" value="3" /></div>
242    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r1" value="2" /></div>
243    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r1" value="1" /></div>
244    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r1" value="0" /></div>
245    </td></tr><tr><td class="task">
246
247
248 ... of the variety of available research software for this environment
249
250 .. raw:: html
251
252    </td><td class="response">
253    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r2" value="3" /></div>
254    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r2" value="2" /></div>
255    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r2" value="1" /></div>
256    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r2" value="0" /></div>
257    </td></tr><tr class="oddrow"><td class="task">
258
259
260 ... of the availability of commercial support
261
262 .. raw:: html
263
264    </td><td class="response">
265    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r3" value="3" /></div>
266    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r3" value="2" /></div>
267    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r3" value="1" /></div>
268    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r3" value="0" /></div>
269    </td></tr><tr><td class="task">
270
271
272 ... many of my colleagues use something similar
273
274 .. raw:: html
275
276    </td><td class="response">
277    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r4" value="3" /></div>
278    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r4" value="2" /></div>
279    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r4" value="1" /></div>
280    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r4" value="0" /></div>
281    </td></tr><tr class="oddrow"><td class="task">
282
283
284 ... it is popular and I can get solutions for problems from web forums and mailing lists
285
286 .. raw:: html
287
288    </td><td class="response">
289    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r5" value="3" /></div>
290    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r5" value="2" /></div>
291    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r5" value="1" /></div>
292    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r5" value="0" /></div>
293    </td></tr><tr><td class="task">
294
295
296 ... I rely on a particular application that runs in this environment only
297
298 .. raw:: html
299
300    </td><td class="response">
301    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r6" value="3" /></div>
302    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r6" value="2" /></div>
303    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r6" value="1" /></div>
304    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r6" value="0" /></div>
305    </td></tr><tr class="oddrow"><td class="task">
306
307
308 ... it has adequate support for all required hardware
309
310 .. raw:: html
311
312    </td><td class="response">
313    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r7" value="3" /></div>
314    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r7" value="2" /></div>
315    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r7" value="1" /></div>
316    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r7" value="0" /></div>
317    </td></tr><tr><td class="task">
318
319
320 ... I have the necessary technical skills to maintain this environment myself
321
322 .. raw:: html
323
324    </td><td class="response">
325    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r8" value="3" /></div>
326    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r8" value="2" /></div>
327    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r8" value="1" /></div>
328    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r8" value="0" /></div>
329    </td>
330    </tr>
331    </table>
332
333
334 Managed scientific software environment
335 ---------------------------------------
336
337 The following questions are about a managed environment of scientific software
338 that is provided to you to carry out computing and data analysis. Such an
339 environment is typically managed by **dedicated IT staff**, and **you don't
340 have permissions to install arbitrary software**. This environment may be
341 shared by many researchers in a lab, a whole research institution, or even be
342 publicly accessible. If you have access to multiple environments of this kind,
343 please describe the one that offers most support for your particular research
344 purposes.
345
346
347 .. raw:: html
348
349    <table class="questionaire">
350    <tr class="oddrow">
351    <td>
352
353 What fraction of time do you spend in this environment during your research
354 activities?
355
356 .. raw:: html
357
358    </td><td class="response">
359    <select name="man_time" size="1">
360    <option value="none" selected="selected" label="Select an option">Select an option</option>
361    <option value="notime" label="None/I don't use this">None/I don't use this</option>
362    <option value="little" label="Less then half of the time">Less then half of the time</option>
363    <option value="most" label="More than half of the time">More than half of the time</option>
364    <option value="always" label="All of the time">All of the time</option>
365    </select>
366    </td></tr><tr><td>
367
368 What type of hardware is this software environment running on?
369
370 .. raw:: html
371
372    </td><td class="response">
373    <select name="man_hardware" size="1">
374    <option value="none" selected="selected" label="Select an option">Select an option</option>
375    <option value="laptop" label="Laptop/Portable device">Laptop/Portable device</option>
376    <option value="desktop" label="Commodity desktop">Commodity desktop</option>
377    <option value="workstation" label="High-performance workstation">High-performance workstation</option>
378    <option value="cluster" label="Compute cluster">Compute cluster</option>
379    <option value="grid" label="Grid/Cloud-computing facility">Grid/Cloud-computing facility</option>
380    </select>
381    </td></tr><tr class="oddrow"><td>
382
383
384 What operating system is this environment running on?
385
386 .. raw:: html
387
388    </td><td class="response">
389    <select name="man_os" size="1">
390
391 .. raw:: html
392    :file: select_os_options.inc
393
394 .. raw:: html
395
396    </select>
397    </td>
398    </tr>
399    </table>
400
401 ---------------------------------------------------------------
402
403 How much do you agree to the following statements?
404
405 .. raw:: html
406
407    <table>
408    <tr class="oddrow">
409    <td class="task">
410
411 This environment provides me with the best available tools for my research
412
413 .. raw:: html
414
415    </td><td class="response">
416    <div class="rating">Definitely agree<br /><input type="radio" name="man_r1" value="3" /></div>
417    <div class="rating">Mostly agree<br /><input type="radio" name="man_r1" value="2" /></div>
418    <div class="rating">Mostly disagree<br /><input type="radio" name="man_r1" value="1" /></div>
419    <div class="rating">Definitely disagree<br /><input type="radio" name="man_r1" value="0" /></div>
420    </td></tr><tr><td class="task">
421
422 The support staff solves all my technical problems and addresses my demands in
423 a timely fashion
424
425 .. raw:: html
426
427    </td><td class="response">
428    <div class="rating">Definitely agree<br /><input type="radio" name="man_r2" value="3" /></div>
429    <div class="rating">Mostly agree<br /><input type="radio" name="man_r2" value="2" /></div>
430    <div class="rating">Mostly disagree<br /><input type="radio" name="man_r2" value="1" /></div>
431    <div class="rating">Definitely disagree<br /><input type="radio" name="man_r2" value="0" /></div>
432    </td></tr><tr class="oddrow"><td class="task">
433
434 There are always enough licenses for essential commercial software tools
435
436 .. raw:: html
437
438    </td><td class="response">
439    <div class="rating">Definitely agree<br /><input type="radio" name="man_r3" value="3" /></div>
440    <div class="rating">Mostly agree<br /><input type="radio" name="man_r3" value="2" /></div>
441    <div class="rating">Mostly disagree<br /><input type="radio" name="man_r3" value="1" /></div>
442    <div class="rating">Definitely disagree<br /><input type="radio" name="man_r3" value="0" /></div>
443    </td></tr><tr><td class="task">
444
445 I need to deploy additional software to be able to perform my research in this environment
446
447 .. raw:: html
448
449    </td><td class="response">
450    <div class="rating">Definitely agree<br /><input type="radio" name="man_r4" value="3" /></div>
451    <div class="rating">Mostly agree<br /><input type="radio" name="man_r4" value="2" /></div>
452    <div class="rating">Mostly disagree<br /><input type="radio" name="man_r4" value="1" /></div>
453    <div class="rating">Definitely disagree<br /><input type="radio" name="man_r4" value="0" /></div>
454    </td></tr><tr class="oddrow"><td class="task">
455
456
457 Using this managed environment is more cost effective than operating a suitable
458 environment myself
459
460 .. raw:: html
461
462    </td><td class="response">
463    <div class="rating">Definitely agree<br /><input type="radio" name="man_r5" value="3" /></div>
464    <div class="rating">Mostly agree<br /><input type="radio" name="man_r5" value="2" /></div>
465    <div class="rating">Mostly disagree<br /><input type="radio" name="man_r5" value="1" /></div>
466    <div class="rating">Definitely disagree<br /><input type="radio" name="man_r5" value="0" /></div>
467    </td></tr><tr><td class="task">
468
469 .. raw:: html
470
471    </td>
472    </tr>
473    </table>
474
475 Virtualization
476 --------------
477
478 The following questions are about your usage of systems for hardware
479 virtualization in your research -- so-called **virtual machines**.
480 Virtualization is a technology that allows running more than one operating
481 systems on one machine at the same time.
482
483 .. raw:: html
484
485    <table>
486    <tr class="oddrow">
487    <td class="task">
488
489 What fraction of your research activity time do you spend in a virtual
490 environment as opposed to any other environment?
491
492 .. raw:: html
493
494    </td><td class="response">
495    <select name="virt_time" size="1">
496    <option value="none" selected="selected" label="Select an option">Select an option</option>
497    <option value="notime" label="None/I don't use this">None/I don't use this</option>
498    <option value="little" label="Less then half of the time">Less then half of the time</option>
499    <option value="most" label="More than half of the time">More than half of the time</option>
500    <option value="always" label="All of the time">All of the time</option>
501    </select>
502    </td></tr><tr><td class="task">
503
504 Which products for virtualization are you using?
505
506 .. raw:: html
507
508    </td><td class="response">
509    <table><tr><td>
510    <input type="checkbox" name="virt_prod" value="vmware" />VMWare<br />
511    <input type="checkbox" name="virt_prod" value="virtualbox" />VirtualBox<br />
512    <input type="checkbox" name="virt_prod" value="parallels" />Parallels<br />
513    <input type="checkbox" name="virt_prod" value="qemu" />QEMU<br />
514    </td><td>
515    <input type="checkbox" name="virt_prod" value="virtualpc" />Virtual PC<br />
516    <input type="checkbox" name="virt_prod" value="xen" />Xen<br />
517    <input type="checkbox" name="virt_prod" value="kvm" />KVM<br />
518    <input type="checkbox" name="virt_prod" value="othervm" />
519    <input name="virt_other" type="text" size="20" maxlength="40">
520    </td></tr></table>
521    </td></tr><tr class="oddrow"><td>
522
523 What **guest operating system** is running inside virtual machine?
524
525 .. raw:: html
526
527    </td><td class="response">
528    <select name="virt_guest_os" size="1">
529
530 .. raw:: html
531    :file: select_os_options.inc
532
533 .. raw:: html
534
535    </select>
536    </td></tr><tr><td>
537
538 What **host operating system** are the virtual machines running on?
539
540 .. raw:: html
541
542    </td><td class="response">
543    <select name="virt_host_os" size="1">
544
545 .. raw:: html
546    :file: select_os_options.inc
547
548 .. raw:: html
549
550    </select>
551    </td></tr></table>
552
553 ---------------------------------------------------------------
554
555 What are your reasons for employing virtualization in you research?
556 Please indicate how much you agree to the following statements
557
558 .. raw:: html
559
560    <table>
561    <tr class="oddrow"><td class="task">
562
563 I can run software that is otherwise incompatible with my system
564
565 .. raw:: html
566
567    </td><td class="response">
568    <div class="rating">Definitely agree<br /><input type="radio" name="virt_r1" value="3" /></div>
569    <div class="rating">Mostly agree<br /><input type="radio" name="virt_r1" value="2" /></div>
570    <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r1" value="1" /></div>
571    <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r1" value="0" /></div>
572    </td></tr><tr><td class="task">
573
574 I have the ability to easily create a snapshot of my whole analysis environment
575
576 .. raw:: html
577
578    </td><td class="response">
579    <div class="rating">Definitely agree<br /><input type="radio" name="virt_r2" value="3" /></div>
580    <div class="rating">Mostly agree<br /><input type="radio" name="virt_r2" value="2" /></div>
581    <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r2" value="1" /></div>
582    <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r2" value="0" /></div>
583    </td></tr><tr class="oddrow"><td class="task">
584
585
586 I can take my complete analysis environment with me and run it on different
587 machines
588
589 .. raw:: html
590
591    </td><td class="response">
592    <div class="rating">Definitely agree<br /><input type="radio" name="virt_r3" value="3" /></div>
593    <div class="rating">Mostly agree<br /><input type="radio" name="virt_r3" value="2" /></div>
594    <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r3" value="1" /></div>
595    <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r3" value="0" /></div>
596    </td></tr><tr><td class="task">
597
598 The performance of a virtual machine is sufficient for routine application in my
599 research
600
601 .. raw:: html
602
603    </td><td class="response">
604    <div class="rating">Definitely agree<br /><input type="radio" name="virt_r4" value="3" /></div>
605    <div class="rating">Mostly agree<br /><input type="radio" name="virt_r4" value="2" /></div>
606    <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r4" value="1" /></div>
607    <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r4" value="0" /></div>
608    </td>
609    </tr>
610    </table>
611
612
613 Resources for scientific software
614 ---------------------------------
615
616 Where do you obtain scientific software that you employ in your research? Please
617 check all items that apply
618
619 .. raw:: html
620
621    <table class="questionaire">
622    <tr class="oddrow">
623    <td class="response"><input type="checkbox" name="software_resource" value="vendor" /></td><td>
624
625 Directly from vendor or project website
626
627 .. raw:: html
628
629    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="retailer" /></td><td>
630
631 Retailer
632
633 .. raw:: html
634
635    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="os" /></td><td>
636
637 Comes with the operating system
638
639 .. raw:: html
640
641    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="cpan" /></td><td>
642
643 `Comprehensive Perl Archive Network (CPAN) <http://www.cpan.org>`_
644
645 .. raw:: html
646
647    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="cran" /></td><td>
648
649 `Comprehensive R Archive Network (CRAN) <http://cran.r-project.org>`_
650
651 .. raw:: html
652
653    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="epel" /></td><td>
654
655 `Extra Packages for Enterprise Linux (EPEL) <http://fedoraproject.org/wiki/EPEL>`_
656
657 .. raw:: html
658
659    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="fink" /></td><td>
660
661 `Fink <http://www.finkproject.org>`_
662
663 .. raw:: html
664
665    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="freebsdports" /></td><td>
666
667 `FreeBSD ports <http://www.freebsd.org/ports/science.html>`_
668
669 .. raw:: html
670
671    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="incf" /></td><td>
672
673 `International neuroinformatics Coordinating Facility (INCF) Research Tools <http://www.incf.org/resources/research-tools>`_
674
675 .. raw:: html
676
677    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="macports" /></td><td>
678
679 `Macports <http://www.macports.org>`_
680
681 .. raw:: html
682
683    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="matlabcentral" /></td><td>
684
685 `Matlab Central <http://www.mathworks.com/matlabcentral>`_
686
687 .. raw:: html
688
689    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="neurodebian" /></td><td>
690
691 `NeuroDebian <http://neuro.debian.net>`_
692
693 .. raw:: html
694
695    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="nitrc" /></td><td>
696
697 `Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC) <http://www.nitrc.org>`_
698
699 .. raw:: html
700
701    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="pypi" /></td><td>
702
703 `Python Package Index (PyPi) <http://pypi.python.org>`_
704
705 .. raw:: html
706
707    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="pythonbundles" /></td><td>
708
709 Python bundles: `Enthought Python <http://www.enthought.com/products/index.php>`_, `Python(x,y) <http://www.pythonxy.com/>`_
710
711 .. raw:: html
712
713    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="sourceforge" /></td><td>
714
715 `Sourceforge <http://www.sourceforge.net>`_
716
717 .. raw:: html
718
719    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="otherres" /></td><td>
720    <input name="software_resource_other" type="text" size="40" maxlength="200">
721    </td></tr></table>
722
723 Software selection
724 ------------------
725
726 Please select all software that you are using in your research.
727
728 Generic computing/scripting/programming environments
729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
730
731 .. raw:: html
732
733    <table class="questionaire"><tr>
734    <td class="response"><input type="checkbox" name="sw_general" value="cpp" />C/C++</td>
735    <td class="response"><input type="checkbox" name="sw_general" value="fortran" />Fortran</td>
736    <td class="response"><input type="checkbox" name="sw_general" value="idl" />IDL</td>
737    <td class="response"><input type="checkbox" name="sw_general" value="java" />Java</td>
738    <td class="response"><input type="checkbox" name="sw_general" value="labview" />LabVIEW</td>
739    <td class="response"><input type="checkbox" name="sw_general" value="lisrel" />LISREL</td>
740    </tr><tr class="oddrow">
741    <td class="response"><input type="checkbox" name="sw_general" value="maple" />Maple</td>
742    <td class="response"><input type="checkbox" name="sw_general" value="mathcad" />Mathcad</td>
743    <td class="response"><input type="checkbox" name="sw_general" value="mathematica" />Mathematica</td>
744    <td class="response"><input type="checkbox" name="sw_general" value="matlab" />Matlab</td>
745    <td class="response"><input type="checkbox" name="sw_general" value="octave" />Octave</td>
746    <td class="response"><input type="checkbox" name="sw_general" value="perl" />Perl</td>
747    </tr><tr>
748    <td class="response"><input type="checkbox" name="sw_general" value="python" />Python</td>
749    <td class="response"><input type="checkbox" name="sw_general" value="r" />R</td>
750    <td class="response"><input type="checkbox" name="sw_general" value="ruby" />Ruby</td>
751    <td class="response"><input type="checkbox" name="sw_general" value="scilab" />Scilab</td>
752    <td class="response"><input type="checkbox" name="sw_general" value="spss" />SPSS</td>
753    <td class="response"><input type="checkbox" name="sw_general" value="scirun" />SCIRun</td>
754    </tr><tr class="oddrow">
755    <td class="response"><input type="checkbox" name="sw_general" value="shell" />Shell scripting</td>
756    </tr></table>
757
758 Distributed computing - frameworks and controllers
759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
760
761 .. raw:: html
762
763    <table class="questionaire"><tr>
764    <td class="response"><input type="checkbox" name="sw_dc" value="sge" />SGE</td>
765    <td class="response"><input type="checkbox" name="sw_dc" value="torque" />Torque/OpenPBS/Maui</td>
766    <td class="response"><input type="checkbox" name="sw_dc" value="condor" />Condor</td>
767    <td class="response"><input type="checkbox" name="sw_dc" value="globus" />Globus</td>
768    <td class="response"><input type="checkbox" name="sw_dc" value="mpi" />MPI (any)</td>
769    <td class="response"><input type="checkbox" name="sw_dc" value="ipython" />IPython</td>
770    </tr></table>
771
772 Imaging
773 ~~~~~~~
774
775 .. raw:: html
776
777    <table class="questionaire"><tr>
778    <td class="response"><input type="checkbox" name="sw_img" value="3dslicer" />3D Slicer</td>
779    <td class="response"><input type="checkbox" name="sw_img" value="afni" />AFNI</td>
780    <td class="response"><input type="checkbox" name="sw_img" value="aeskulap" />Aeskulap</td>
781    <td class="response"><input type="checkbox" name="sw_img" value="amide" />Amide</td>
782    </tr><tr class="oddrow">
783    <td class="response"><input type="checkbox" name="sw_img" value="birn" />BIRN Tools</td>
784    <td class="response"><input type="checkbox" name="sw_img" value="brainstools" />BRAINS Tools</td>
785    <td class="response"><input type="checkbox" name="sw_img" value="bioimgsuite" />Bioimage Suite</td>
786    <td class="response"><input type="checkbox" name="sw_img" value="brainmap" />BrainMap</td>
787    </tr><tr>
788    <td class="response"><input type="checkbox" name="sw_img" value="brainvisa" />BrainVISA/Anatomist</td>
789    <td class="response"><input type="checkbox" name="sw_img" value="brainvoyager" />BrainVoyager</td>
790    <td class="response"><input type="checkbox" name="sw_img" value="cmtk" />CMTK</td>
791    <td class="response"><input type="checkbox" name="sw_img" value="camino" />Camino</td>
792    </tr><tr class="oddrow">
793    <td class="response"><input type="checkbox" name="sw_img" value="caret" />Caret</td>
794    <td class="response"><input type="checkbox" name="sw_img" value="connectomviewer" />ConnectomeViewer</td>
795    <td class="response"><input type="checkbox" name="sw_img" value="dsi" />DSI Studio</td>
796    <td class="response"><input type="checkbox" name="sw_img" value="dtitk" />DTI-TK</td>
797    </tr><tr>
798    <td class="response"><input type="checkbox" name="sw_img" value="trackvis" />Diffusion Toolkit/Trackvis</td>
799    <td class="response"><input type="checkbox" name="sw_img" value="fsl" />FSL</td>
800    <td class="response"><input type="checkbox" name="sw_img" value="fiji" />Fiji</td>
801    <td class="response"><input type="checkbox" name="sw_img" value="freesurfer" />FreeSurfer</td>
802    </tr><tr class="oddrow">
803    <td class="response"><input type="checkbox" name="sw_img" value="itksnap" />ITK-SNAP</td>
804    <td class="response"><input type="checkbox" name="sw_img" value="imagej" />ImageJ</td>
805    <td class="response"><input type="checkbox" name="sw_img" value="invesalius" />Invesalius</td>
806    <td class="response"><input type="checkbox" name="sw_img" value="loni" />LONI</td>
807    </tr><tr>
808    <td class="response"><input type="checkbox" name="sw_img" value="lipsia" />Lipsia</td>
809    <td class="response"><input type="checkbox" name="sw_img" value="mango" />Mango</td>
810    <td class="response"><input type="checkbox" name="sw_img" value="mipav" />MIPAV/JIST</td>
811    <td class="response"><input type="checkbox" name="sw_img" value="mni" />MNI tools</td>
812    </tr><tr class="oddrow">
813    <td class="response"><input type="checkbox" name="sw_img" value="mricron" />MRIcron</td>
814    <td class="response"><input type="checkbox" name="sw_img" value="mrtrix" />MRtrix</td>
815    <td class="response"><input type="checkbox" name="sw_img" value="mvpa" />Matlab MVPA toolbox</td>
816    <td class="response"><input type="checkbox" name="sw_img" value="nibabel" />NiBabel/PyNIfTI</td>
817    </tr><tr>
818    <td class="response"><input type="checkbox" name="sw_img" value="nipy" />NiPy/NiTime/DiPy/NiPype</td>
819    <td class="response"><input type="checkbox" name="sw_img" value="pymvpa" />PyMVPA</td>
820    <td class="response"><input type="checkbox" name="sw_img" value="rest" />REST</td>
821    <td class="response"><input type="checkbox" name="sw_img" value="spm" />SPM</td>
822    </tr><tr class="oddrow">
823    <td class="response"><input type="checkbox" name="sw_img" value="v3d" />V3D</td>
824    <td class="response"><input type="checkbox" name="sw_img" value="voxbo" />VoxBo</td>
825    </tr></table>
826
827 Data management
828 ~~~~~~~~~~~~~~~
829
830 .. raw:: html
831
832    <table class="questionaire"><tr>
833    <td class="response"><input type="checkbox" name="sw_datamanage" value="xnat" />XNAT/PyXNAT/...</td>
834    <td class="response"><input type="checkbox" name="sw_datamanage" value="hid" />Human Imaging Database (HID)</td>
835    </tr></table>
836
837 Neural systems modeling
838 ~~~~~~~~~~~~~~~~~~~~~~~
839
840 .. raw:: html
841
842    <table class="questionaire"><tr>
843    <td class="response"><input type="checkbox" name="sw_neusys" value="brian" />Brian</td>
844    <td class="response"><input type="checkbox" name="sw_neusys" value="ecanse" />Siemens ECANSE</td>
845    <td class="response"><input type="checkbox" name="sw_neusys" value="emergent" />Emergent NNSS</td>
846    <td class="response"><input type="checkbox" name="sw_neusys" value="genesis" />Genesis</td>
847    <td class="response"><input type="checkbox" name="sw_neusys" value="iNVT" />iNVT</td>
848    <td class="response"><input type="checkbox" name="sw_neusys" value="iqr" />iqr</td>
849    </tr><tr class="oddrow">
850    <td class="response"><input type="checkbox" name="sw_neusys" value="moose" />Moose</td>
851    <td class="response"><input type="checkbox" name="sw_neusys" value="nengo" />Nengo</td>
852    <td class="response"><input type="checkbox" name="sw_neusys" value="nest" />NEST</td>
853    <td class="response"><input type="checkbox" name="sw_neusys" value="neuroml" />NeuroML</td>
854    <td class="response"><input type="checkbox" name="sw_neusys" value="neuron" />NEURON</td>
855    <td class="response"><input type="checkbox" name="sw_neusys" value="neurosolutions" />NeuroSolutions</td>
856    </tr><tr>
857    <td class="response"><input type="checkbox" name="sw_neusys" value="pcsim" />PCSIM</td>
858    <td class="response"><input type="checkbox" name="sw_neusys" value="peltarion" />Peltarion</td>
859    <td class="response"><input type="checkbox" name="sw_neusys" value="psics" />PSICS</td>
860    <td class="response"><input type="checkbox" name="sw_neusys" value="pynn" />PyNN</td>
861    <td class="response"><input type="checkbox" name="sw_neusys" value="snnap" />SNNAP</td>
862    <td class="response"><input type="checkbox" name="sw_neusys" value="snns" />SNNS</td>
863    </tr><tr class="oddrow">
864    <td class="response"><input type="checkbox" name="sw_neusys" value="topographica" />Topographica</td>
865    <td class="response"><input type="checkbox" name="sw_neusys" value="xnbc" />XNBC</td>
866    </tr></table>
867
868 Electrophysiology, MEG/EEG
869 ~~~~~~~~~~~~~~~~~~~~~~~~~~
870
871 .. raw:: html
872
873    <table class="questionaire"><tr>
874    <td class="response"><input type="checkbox" name="sw_electro" value="asa" />ASA</td>
875    <td class="response"><input type="checkbox" name="sw_electro" value="besa" />BESA</td>
876    <td class="response"><input type="checkbox" name="sw_electro" value="biosig" />BioSig</td>
877    <td class="response"><input type="checkbox" name="sw_electro" value="brainstorm" />BrainStorm</td>
878    <td class="response"><input type="checkbox" name="sw_electro" value="brainsuite" />BrainSuite</td>
879    <td class="response"><input type="checkbox" name="sw_electro" value="brainvisionanalyzer" />Brainvision Analyzer</td>
880    </tr><tr class="oddrow">
881    <td class="response"><input type="checkbox" name="sw_electro" value="chronus" />Chronux</td>
882    <td class="response"><input type="checkbox" name="sw_electro" value="eeglab" />EEGLAB</td>
883    <td class="response"><input type="checkbox" name="sw_electro" value="elekta" />Elekta Neuromag</td>
884    <td class="response"><input type="checkbox" name="sw_electro" value="emse" />EMSE</td>
885    <td class="response"><input type="checkbox" name="sw_electro" value="fieldtrip" />Fieldtrip</td>
886    <td class="response"><input type="checkbox" name="sw_electro" value="klustakwik" />KlustaKwik</td>
887    </tr><tr>
888    <td class="response"><input type="checkbox" name="sw_electro" value="loreta" />LORETA/sLORETA</td>
889    <td class="response"><input type="checkbox" name="sw_electro" value="mne" />MNE suite</td>
890    <td class="response"><input type="checkbox" name="sw_electro" value="mclust" />MClust</td>
891    <td class="response"><input type="checkbox" name="sw_electro" value="neuroexplorer" />NeuroExplorer</td>
892    <td class="response"><input type="checkbox" name="sw_electro" value="neuroshare" />Neuroshare</td>
893    <td class="response"><input type="checkbox" name="sw_electro" value="openmeeg" />OpenMEEG</td>
894    </tr><tr class="oddrow">
895    <td class="response"><input type="checkbox" name="sw_electro" value="openelectrophy" />Openelectrophy</td>
896    <td class="response"><input type="checkbox" name="sw_electro" value="plexon" />Plexon</td>
897    <td class="response"><input type="checkbox" name="sw_electro" value="rtxi" />RTXI</td>
898    <td class="response"><input type="checkbox" name="sw_electro" value="relacs" />Relacs</td>
899    <td class="response"><input type="checkbox" name="sw_electro" value="trellis" />Trellis-neuro</td>
900    </tr></table>
901
902 Brain-computer interface
903 ~~~~~~~~~~~~~~~~~~~~~~~~
904
905 .. raw:: html
906
907    <table class="questionaire"><tr>
908    <td class="response"><input type="checkbox" name="sw_bci" value="bci2000" />BCI2000</td>
909    <td class="response"><input type="checkbox" name="sw_bci" value="openvibe" />OpenVIBE</td>
910    <td class="response"><input type="checkbox" name="sw_bci" value="pyff" />Pyff</td>
911    </tr></table>
912
913 Hardware interface/Data acquisition
914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
915
916 .. raw:: html
917
918    <table class="questionaire"><tr>
919    <td class="response"><input type="checkbox" name="sw_acq" value="comedi" />Comedi</td>
920    <td class="response"><input type="checkbox" name="sw_acq" value="epics" />EPICS</td>
921    <td class="response"><input type="checkbox" name="sw_acq" value="mx" />MX</td>
922    </tr></table>
923
924 Real-time solutions
925 ~~~~~~~~~~~~~~~~~~~
926
927 .. raw:: html
928
929    <table class="questionaire"><tr>
930    <td class="response"><input type="checkbox" name="sw_rt" value="rtai" />RTAI</td>
931    <td class="response"><input type="checkbox" name="sw_rt" value="xenomai" />Xenomai</td>
932    <td class="response"><input type="checkbox" name="sw_rt" value="rtlinux" />RTLinux</td>
933    <td class="response"><input type="checkbox" name="sw_rt" value="preempt_rt" />PREEMPT_RT</td>
934    </tr></table>
935
936 Psychophysics/Experiment control
937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
938
939 .. raw:: html
940
941    <table class="questionaire"><tr>
942    <td class="response"><input type="checkbox" name="sw_psychphys" value="dmdx" />DMDX</td>
943    <td class="response"><input type="checkbox" name="sw_psychphys" value="eprime" />E-Prime</td>
944    <td class="response"><input type="checkbox" name="sw_psychphys" value="presentation" />Presentation</td>
945    <td class="response"><input type="checkbox" name="sw_psychphys" value="psychopy" />PsychoPy</td>
946    <td class="response"><input type="checkbox" name="sw_psychphys" value="pyepl" />PyEPL</td>
947    <td class="response"><input type="checkbox" name="sw_psychphys" value="psychtoolbox" />Psychtoolbox</td>
948    </tr><tr class="oddrow">
949    <td class="response"><input type="checkbox" name="sw_psychphys" value="psytoolkit" />Psytoolkit</td>
950    <td class="response"><input type="checkbox" name="sw_psychphys" value="opensesame" />OpenSesame</td>
951    <td class="response"><input type="checkbox" name="sw_psychphys" value="psyscope" />PsyScope</td>
952    <td class="response"><input type="checkbox" name="sw_psychphys" value="visionegg" />VisionEgg</td>
953    <td class="response"><input type="checkbox" name="sw_psychphys" value="tscope" />Tscope</td>
954    </tr></table>
955
956 Other
957 ~~~~~
958
959 .. raw:: html
960
961    <table class="questionaire"><tr>
962    <td class="response"><input type="checkbox" name="sw_other" value="othersw" />
963    <input name="sw_other_name" type="text" size="40" maxlength="200"> <span style="font-size:70%">(comma-separated list)</span></td>
964    </tr></table>
965
966 ---------------------------------------------------------------
967
968 .. raw:: html
969
970    <input id="submit_button" value="Submit survey" type="submit">
971    <div id="server_response"></div>
972    </form>
973
974
975