2 Scientific software usage in neuroscience research
3 ==================================================
5 This survey should take about five minutes. Immediately after submission you
6 will be presented with some statistics on previous responses. Please try to
7 answer as many questions as you can, but don't worry if you cannot answer all
8 of them. *You need to have javascript enabled in your browser for this survey.*
9 For feedback email team@neuro.debian.net
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68 Which country are you working in?
72 </td><td class="response">
75 :file: select_country.inc
81 Where are you working?
85 </td><td class="response">
86 <select name="bg_employer" size="1">
87 <option value="none" selected="selected" label="Select an option">Select an option</option>
88 <option value="edu_priv" label="Higher education (privately funded)">Higher education (privately funded)</option>
89 <option value="edu_pub" label="Higher education (publicly funded)">Higher education (publicly funded)</option>
90 <option value="research_priv" label="Research institution (privately funded)">Research institution (privately funded)</option>
91 <option value="research_pub" label="Research institution (publicly funded)">Research institution (publicly funded)</option>
92 <option value="company" label="Company">Company</option>
94 </td></tr><tr class="oddrow"><td>
96 What is your position?
100 </td><td class="response">
101 <select name="bg_position" size="1">
102 <option value="none" selected="selected" label="Select an option">Select an option</option>
103 <option value="undergrad" label="Undergraduate student">Undergraduate student</option>
104 <option value="graduate" label="PhD student">PhD student</option>
105 <option value="postdoc" label="Postdoc">Postdoc</option>
106 <option value="professor" label="Professor/Supervisor">Professor/Supervisor</option>
107 <option value="ra" label="Research assistant">Research assistant</option>
108 <option value="researcher" label="Other researcher">Other researcher</option>
109 <option value="sysadmin" label="System administrator">System administrator</option>
110 <option value="developer" label="Software developer">Software developer</option>
111 <option value="technician" label="Technician/Engineer">Technician/Engineer</option>
115 What type of data are you working with? Please check all items that apply.
119 </td><td class="response">
121 <input type="checkbox" name="bg_datamod" value="behav" />Behavioral<br />
122 <input type="checkbox" name="bg_datamod" value="genetic" />Genetic<br />
123 <input type="checkbox" name="bg_datamod" value="mri" />MRI/fMRI/DTI<br />
124 <input type="checkbox" name="bg_datamod" value="meeg" />EEG/MEG<br />
125 <input type="checkbox" name="bg_datamod" value="pet" />PET/SPECT<br />
127 <input type="checkbox" name="bg_datamod" value="ephys" />Electrophysiology<br />
128 <input type="checkbox" name="bg_datamod" value="spectro" />Microspectroscopy<br />
129 <input type="checkbox" name="bg_datamod" value="simulation" />Computational modeling/Simulations<br />
130 <input type="checkbox" name="bg_datamod" value="otherdm" />
131 <input name="bg_datamod_other" type="text" size="20" maxlength="40">
133 </td></tr><tr class="oddrow"><td>
135 Are you developing software that is intended to be used by others?
139 </td><td class="response">
140 <span><input type="radio" name="bg_developer" value="yes" />Yes</span>
141 <span><input type="radio" name="bg_developer" value="no" checked="checked" />No</span>
146 Personal scientific software environment
147 ----------------------------------------
149 Here are a few questions about your personal scientific software environment
150 for research activities like data acquisition, computational modeling, and data
151 analysis. You might be running this on your laptop, desktop, personal
152 workstation or any other machine where **you decide** what software you are
153 using, and you typically also have permission to **install it yourself**. If
154 you are operating different environments, please describe the one that you find
155 most productive for your research purposes. If you don't have a machine that
156 you administer yourself, instead, please indicate what kind of scientific
157 software environment you would like to be doing your research in.
165 What fraction of your research activity time do you spend in this software
166 environment as opposed to any other environment that you might have access to?
170 </td><td class="response">
171 <select name="pers_time" size="1">
172 <option value="none" selected="selected" label="Select an option">Select an option</option>
173 <option value="notime" label="None/I don't have this environment">None/I don't have this environment</option>
174 <option value="little" label="Less then half of the time">Less then half of the time</option>
175 <option value="most" label="More than half of the time">More than half of the time</option>
176 <option value="always" label="All of the time">All of the time</option>
180 What type of hardware are you using?
184 </td><td class="response">
185 <select name="pers_hardware" size="1">
186 <option value="none" selected="selected" label="Select an option">Select an option</option>
187 <option value="laptop" label="Laptop/Portable device">Laptop/Portable device</option>
188 <option value="desktop" label="Commodity desktop">Commodity desktop</option>
189 <option value="workstation" label="High-performance workstation">High-performance workstation</option>
190 <option value="cluster" label="Compute cluster">Compute cluster</option>
191 <option value="grid" label="Grid/Cloud-computing facility">Grid/Cloud-computing facility</option>
193 </td></tr><tr class="oddrow"><td>
195 What operating system is this environment running on?
199 </td><td class="response">
200 <select name="pers_os" size="1">
203 :file: select_os_options.inc
210 How much time do you spend each month on maintaining this environment? This
211 includes the time spent on operating system (security) upgrades, as well as
212 installing and updating scientific software.
216 </td><td class="response">
217 <input name="pers_maint_time" type="text" size="3" maxlength="3"> hours per month
222 ---------------------------------------------------------------
224 Please indicate how much you agree to the following statements.
229 <tr><th colspan="2" style="text-align:left;font-weight:normal">
231 *I prefer this particular scientific software environment because ...*
235 </th></tr><tr class="oddrow">
238 ... the developers of an important research software recommend it
242 </td><td class="response">
243 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r1" value="3" /></div>
244 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r1" value="2" /></div>
245 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r1" value="1" /></div>
246 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r1" value="0" /></div>
247 </td></tr><tr><td class="task">
250 ... of the variety of available research software for this environment
254 </td><td class="response">
255 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r2" value="3" /></div>
256 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r2" value="2" /></div>
257 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r2" value="1" /></div>
258 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r2" value="0" /></div>
259 </td></tr><tr class="oddrow"><td class="task">
262 ... of the availability of commercial support
266 </td><td class="response">
267 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r3" value="3" /></div>
268 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r3" value="2" /></div>
269 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r3" value="1" /></div>
270 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r3" value="0" /></div>
271 </td></tr><tr><td class="task">
274 ... many of my colleagues use something similar
278 </td><td class="response">
279 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r4" value="3" /></div>
280 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r4" value="2" /></div>
281 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r4" value="1" /></div>
282 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r4" value="0" /></div>
283 </td></tr><tr class="oddrow"><td class="task">
286 ... it is popular and I can get solutions for problems from web forums and mailing lists
290 </td><td class="response">
291 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r5" value="3" /></div>
292 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r5" value="2" /></div>
293 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r5" value="1" /></div>
294 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r5" value="0" /></div>
295 </td></tr><tr><td class="task">
298 ... I rely on a particular application that runs in this environment only
302 </td><td class="response">
303 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r6" value="3" /></div>
304 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r6" value="2" /></div>
305 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r6" value="1" /></div>
306 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r6" value="0" /></div>
307 </td></tr><tr class="oddrow"><td class="task">
310 ... it has adequate support for all required hardware
314 </td><td class="response">
315 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r7" value="3" /></div>
316 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r7" value="2" /></div>
317 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r7" value="1" /></div>
318 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r7" value="0" /></div>
319 </td></tr><tr><td class="task">
322 ... I have the necessary technical skills to maintain this environment myself
326 </td><td class="response">
327 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r8" value="3" /></div>
328 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r8" value="2" /></div>
329 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r8" value="1" /></div>
330 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r8" value="0" /></div>
336 Managed scientific software environment
337 ---------------------------------------
339 The following questions are about a managed environment of scientific software
340 that is provided to you to carry out computing and data analysis. Such an
341 environment is typically managed by **dedicated IT staff**, and **you don't
342 have permissions to install arbitrary software**. This environment may be
343 shared by many researchers in a lab, a whole research institution, or even be
344 publicly accessible. If you have access to multiple environments of this kind,
345 please describe the one that offers most support for your particular research
351 <table class="questionaire">
355 What fraction of time do you spend in this environment during your research
360 </td><td class="response">
361 <select name="man_time" size="1">
362 <option value="none" selected="selected" label="Select an option">Select an option</option>
363 <option value="notime" label="None/I don't use this">None/I don't use this</option>
364 <option value="little" label="Less then half of the time">Less then half of the time</option>
365 <option value="most" label="More than half of the time">More than half of the time</option>
366 <option value="always" label="All of the time">All of the time</option>
370 What type of hardware is this software environment running on?
374 </td><td class="response">
375 <select name="man_hardware" size="1">
376 <option value="none" selected="selected" label="Select an option">Select an option</option>
377 <option value="laptop" label="Laptop/Portable device">Laptop/Portable device</option>
378 <option value="desktop" label="Commodity desktop">Commodity desktop</option>
379 <option value="workstation" label="High-performance workstation">High-performance workstation</option>
380 <option value="cluster" label="Compute cluster">Compute cluster</option>
381 <option value="grid" label="Grid/Cloud-computing facility">Grid/Cloud-computing facility</option>
383 </td></tr><tr class="oddrow"><td>
386 What operating system is this environment running on?
390 </td><td class="response">
391 <select name="man_os" size="1">
394 :file: select_os_options.inc
403 ---------------------------------------------------------------
405 How much do you agree to the following statements?
413 This environment provides me with the best available tools for my research
417 </td><td class="response">
418 <div class="rating">Definitely agree<br /><input type="radio" name="man_r1" value="3" /></div>
419 <div class="rating">Mostly agree<br /><input type="radio" name="man_r1" value="2" /></div>
420 <div class="rating">Mostly disagree<br /><input type="radio" name="man_r1" value="1" /></div>
421 <div class="rating">Definitely disagree<br /><input type="radio" name="man_r1" value="0" /></div>
422 </td></tr><tr><td class="task">
424 The support staff solves all my technical problems and addresses my demands in
429 </td><td class="response">
430 <div class="rating">Definitely agree<br /><input type="radio" name="man_r2" value="3" /></div>
431 <div class="rating">Mostly agree<br /><input type="radio" name="man_r2" value="2" /></div>
432 <div class="rating">Mostly disagree<br /><input type="radio" name="man_r2" value="1" /></div>
433 <div class="rating">Definitely disagree<br /><input type="radio" name="man_r2" value="0" /></div>
434 </td></tr><tr class="oddrow"><td class="task">
436 There are always enough licenses for essential commercial software tools
440 </td><td class="response">
441 <div class="rating">Definitely agree<br /><input type="radio" name="man_r3" value="3" /></div>
442 <div class="rating">Mostly agree<br /><input type="radio" name="man_r3" value="2" /></div>
443 <div class="rating">Mostly disagree<br /><input type="radio" name="man_r3" value="1" /></div>
444 <div class="rating">Definitely disagree<br /><input type="radio" name="man_r3" value="0" /></div>
445 </td></tr><tr><td class="task">
447 I need to deploy additional software to be able to perform my research in this environment
451 </td><td class="response">
452 <div class="rating">Definitely agree<br /><input type="radio" name="man_r4" value="3" /></div>
453 <div class="rating">Mostly agree<br /><input type="radio" name="man_r4" value="2" /></div>
454 <div class="rating">Mostly disagree<br /><input type="radio" name="man_r4" value="1" /></div>
455 <div class="rating">Definitely disagree<br /><input type="radio" name="man_r4" value="0" /></div>
456 </td></tr><tr class="oddrow"><td class="task">
459 Using this managed environment is more cost effective than operating a suitable
464 </td><td class="response">
465 <div class="rating">Definitely agree<br /><input type="radio" name="man_r5" value="3" /></div>
466 <div class="rating">Mostly agree<br /><input type="radio" name="man_r5" value="2" /></div>
467 <div class="rating">Mostly disagree<br /><input type="radio" name="man_r5" value="1" /></div>
468 <div class="rating">Definitely disagree<br /><input type="radio" name="man_r5" value="0" /></div>
469 </td></tr><tr><td class="task">
480 The following questions are about your usage of systems for hardware
481 virtualization in your research -- so-called **virtual machines**.
482 Virtualization is a technology that allows running more than one operating
483 systems on one machine at the same time.
491 What fraction of your research activity time do you spend in a virtual
492 environment as opposed to any other environment?
496 </td><td class="response">
497 <select name="virt_time" size="1">
498 <option value="none" selected="selected" label="Select an option">Select an option</option>
499 <option value="notime" label="None/I don't use this">None/I don't use this</option>
500 <option value="little" label="Less then half of the time">Less then half of the time</option>
501 <option value="most" label="More than half of the time">More than half of the time</option>
502 <option value="always" label="All of the time">All of the time</option>
504 </td></tr><tr><td class="task">
506 Which products for virtualization are you using?
510 </td><td class="response">
512 <input type="checkbox" name="virt_prod" value="vmware" />VMWare<br />
513 <input type="checkbox" name="virt_prod" value="virtualbox" />VirtualBox<br />
514 <input type="checkbox" name="virt_prod" value="parallels" />Parallels<br />
515 <input type="checkbox" name="virt_prod" value="qemu" />QEMU<br />
517 <input type="checkbox" name="virt_prod" value="virtualpc" />Virtual PC<br />
518 <input type="checkbox" name="virt_prod" value="xen" />Xen<br />
519 <input type="checkbox" name="virt_prod" value="kvm" />KVM<br />
520 <input type="checkbox" name="virt_prod" value="othervm" />
521 <input name="virt_other" type="text" size="20" maxlength="40">
523 </td></tr><tr class="oddrow"><td>
525 What **guest operating system** is running inside virtual machine?
529 </td><td class="response">
530 <select name="virt_guest_os" size="1">
533 :file: select_os_options.inc
540 What **host operating system** are the virtual machines running on?
544 </td><td class="response">
545 <select name="virt_host_os" size="1">
548 :file: select_os_options.inc
555 ---------------------------------------------------------------
557 What are your reasons for employing virtualization in you research?
558 Please indicate how much you agree to the following statements
563 <tr class="oddrow"><td class="task">
565 I can run software that is otherwise incompatible with my system
569 </td><td class="response">
570 <div class="rating">Definitely agree<br /><input type="radio" name="virt_r1" value="3" /></div>
571 <div class="rating">Mostly agree<br /><input type="radio" name="virt_r1" value="2" /></div>
572 <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r1" value="1" /></div>
573 <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r1" value="0" /></div>
574 </td></tr><tr><td class="task">
576 I have the ability to easily create a snapshot of my whole analysis environment
580 </td><td class="response">
581 <div class="rating">Definitely agree<br /><input type="radio" name="virt_r2" value="3" /></div>
582 <div class="rating">Mostly agree<br /><input type="radio" name="virt_r2" value="2" /></div>
583 <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r2" value="1" /></div>
584 <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r2" value="0" /></div>
585 </td></tr><tr class="oddrow"><td class="task">
588 I can take my complete analysis environment with me and run it on different
593 </td><td class="response">
594 <div class="rating">Definitely agree<br /><input type="radio" name="virt_r3" value="3" /></div>
595 <div class="rating">Mostly agree<br /><input type="radio" name="virt_r3" value="2" /></div>
596 <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r3" value="1" /></div>
597 <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r3" value="0" /></div>
598 </td></tr><tr><td class="task">
600 The performance of a virtual machine is sufficient for routine application in my
605 </td><td class="response">
606 <div class="rating">Definitely agree<br /><input type="radio" name="virt_r4" value="3" /></div>
607 <div class="rating">Mostly agree<br /><input type="radio" name="virt_r4" value="2" /></div>
608 <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r4" value="1" /></div>
609 <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r4" value="0" /></div>
615 Resources for scientific software
616 ---------------------------------
618 Where do you obtain scientific software that you employ in your research? Please
619 check all items that apply
623 <table class="questionaire">
625 <td class="response"><input type="checkbox" name="software_resource" value="vendor" /></td><td>
627 Directly from vendor or project website
631 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="retailer" /></td><td>
637 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="os" /></td><td>
639 Comes with the operating system
643 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="cpan" /></td><td>
645 `Comprehensive Perl Archive Network (CPAN) <http://www.cpan.org>`_
649 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="cran" /></td><td>
651 `Comprehensive R Archive Network (CRAN) <http://cran.r-project.org>`_
655 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="epel" /></td><td>
657 `Extra Packages for Enterprise Linux (EPEL) <http://fedoraproject.org/wiki/EPEL>`_
661 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="fink" /></td><td>
663 `Fink <http://www.finkproject.org>`_
667 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="freebsdports" /></td><td>
669 `FreeBSD ports <http://www.freebsd.org/ports/science.html>`_
673 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="incf" /></td><td>
675 `International neuroinformatics Coordinating Facility (INCF) Research Tools <http://www.incf.org/resources/research-tools>`_
679 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="macports" /></td><td>
681 `Macports <http://www.macports.org>`_
685 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="matlabcentral" /></td><td>
687 `Matlab Central <http://www.mathworks.com/matlabcentral>`_
691 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="neurodebian" /></td><td>
693 `NeuroDebian <http://neuro.debian.net>`_
697 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="nitrc" /></td><td>
699 `Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC) <http://www.nitrc.org>`_
703 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="pypi" /></td><td>
705 `Python Package Index (PyPi) <http://pypi.python.org>`_
709 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="pythonbundles" /></td><td>
711 Python bundles: `Enthought Python <http://www.enthought.com/products/index.php>`_, `Python(x,y) <http://www.pythonxy.com/>`_
715 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="sourceforge" /></td><td>
717 `Sourceforge <http://www.sourceforge.net>`_
721 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="otherres" /></td><td>
722 <input name="software_resource_other" type="text" size="40" maxlength="200">
728 Please select all software that you are using in your research.
730 Generic computing/scripting/programming environments
731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
735 <table class="questionaire"><tr>
736 <td class="response"><input type="checkbox" name="sw_general" value="cpp" />C/C++</td>
737 <td class="response"><input type="checkbox" name="sw_general" value="fortran" />Fortran</td>
738 <td class="response"><input type="checkbox" name="sw_general" value="idl" />IDL</td>
739 <td class="response"><input type="checkbox" name="sw_general" value="java" />Java</td>
740 <td class="response"><input type="checkbox" name="sw_general" value="labview" />LabVIEW</td>
741 <td class="response"><input type="checkbox" name="sw_general" value="lisrel" />LISREL</td>
742 </tr><tr class="oddrow">
743 <td class="response"><input type="checkbox" name="sw_general" value="maple" />Maple</td>
744 <td class="response"><input type="checkbox" name="sw_general" value="mathcad" />Mathcad</td>
745 <td class="response"><input type="checkbox" name="sw_general" value="mathematica" />Mathematica</td>
746 <td class="response"><input type="checkbox" name="sw_general" value="matlab" />Matlab</td>
747 <td class="response"><input type="checkbox" name="sw_general" value="octave" />Octave</td>
748 <td class="response"><input type="checkbox" name="sw_general" value="perl" />Perl</td>
750 <td class="response"><input type="checkbox" name="sw_general" value="python" />Python</td>
751 <td class="response"><input type="checkbox" name="sw_general" value="r" />R</td>
752 <td class="response"><input type="checkbox" name="sw_general" value="ruby" />Ruby</td>
753 <td class="response"><input type="checkbox" name="sw_general" value="scilab" />Scilab</td>
754 <td class="response"><input type="checkbox" name="sw_general" value="spss" />SPSS</td>
755 <td class="response"><input type="checkbox" name="sw_general" value="scirun" />SCIRun</td>
756 </tr><tr class="oddrow">
757 <td class="response"><input type="checkbox" name="sw_general" value="shell" />Shell scripting</td>
760 Distributed computing - frameworks and controllers
761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
765 <table class="questionaire"><tr>
766 <td class="response"><input type="checkbox" name="sw_dc" value="sge" />SGE</td>
767 <td class="response"><input type="checkbox" name="sw_dc" value="torque" />Torque/OpenPBS/Maui</td>
768 <td class="response"><input type="checkbox" name="sw_dc" value="condor" />Condor</td>
769 <td class="response"><input type="checkbox" name="sw_dc" value="globus" />Globus</td>
770 <td class="response"><input type="checkbox" name="sw_dc" value="mpi" />MPI (any)</td>
771 <td class="response"><input type="checkbox" name="sw_dc" value="ipython" />IPython</td>
779 <table class="questionaire"><tr>
780 <td class="response"><input type="checkbox" name="sw_img" value="3dslicer" />3D Slicer</td>
781 <td class="response"><input type="checkbox" name="sw_img" value="afni" />AFNI</td>
782 <td class="response"><input type="checkbox" name="sw_img" value="aeskulap" />Aeskulap</td>
783 <td class="response"><input type="checkbox" name="sw_img" value="amide" />Amide</td>
784 </tr><tr class="oddrow">
785 <td class="response"><input type="checkbox" name="sw_img" value="birn" />BIRN Tools</td>
786 <td class="response"><input type="checkbox" name="sw_img" value="brainstools" />BRAINS Tools</td>
787 <td class="response"><input type="checkbox" name="sw_img" value="bioimgsuite" />Bioimage Suite</td>
788 <td class="response"><input type="checkbox" name="sw_img" value="brainmap" />BrainMap</td>
790 <td class="response"><input type="checkbox" name="sw_img" value="brainvisa" />BrainVISA/Anatomist</td>
791 <td class="response"><input type="checkbox" name="sw_img" value="brainvoyager" />BrainVoyager</td>
792 <td class="response"><input type="checkbox" name="sw_img" value="cmtk" />CMTK</td>
793 <td class="response"><input type="checkbox" name="sw_img" value="camino" />Camino</td>
794 </tr><tr class="oddrow">
795 <td class="response"><input type="checkbox" name="sw_img" value="caret" />Caret</td>
796 <td class="response"><input type="checkbox" name="sw_img" value="connectomviewer" />ConnectomeViewer</td>
797 <td class="response"><input type="checkbox" name="sw_img" value="dsi" />DSI Studio</td>
798 <td class="response"><input type="checkbox" name="sw_img" value="dtitk" />DTI-TK</td>
800 <td class="response"><input type="checkbox" name="sw_img" value="trackvis" />Diffusion Toolkit/Trackvis</td>
801 <td class="response"><input type="checkbox" name="sw_img" value="fsl" />FSL</td>
802 <td class="response"><input type="checkbox" name="sw_img" value="fiji" />Fiji</td>
803 <td class="response"><input type="checkbox" name="sw_img" value="freesurfer" />FreeSurfer</td>
804 </tr><tr class="oddrow">
805 <td class="response"><input type="checkbox" name="sw_img" value="itksnap" />ITK-SNAP</td>
806 <td class="response"><input type="checkbox" name="sw_img" value="imagej" />ImageJ</td>
807 <td class="response"><input type="checkbox" name="sw_img" value="invesalius" />Invesalius</td>
808 <td class="response"><input type="checkbox" name="sw_img" value="loni" />LONI</td>
810 <td class="response"><input type="checkbox" name="sw_img" value="lipsia" />Lipsia</td>
811 <td class="response"><input type="checkbox" name="sw_img" value="mango" />Mango</td>
812 <td class="response"><input type="checkbox" name="sw_img" value="mipav" />MIPAV/JIST</td>
813 <td class="response"><input type="checkbox" name="sw_img" value="mni" />MNI tools</td>
814 </tr><tr class="oddrow">
815 <td class="response"><input type="checkbox" name="sw_img" value="mricron" />MRIcron</td>
816 <td class="response"><input type="checkbox" name="sw_img" value="mrtrix" />MRtrix</td>
817 <td class="response"><input type="checkbox" name="sw_img" value="mvpa" />Matlab MVPA toolbox</td>
818 <td class="response"><input type="checkbox" name="sw_img" value="nibabel" />NiBabel/PyNIfTI</td>
820 <td class="response"><input type="checkbox" name="sw_img" value="nipy" />NiPy/NiTime/DiPy/NiPype</td>
821 <td class="response"><input type="checkbox" name="sw_img" value="pymvpa" />PyMVPA</td>
822 <td class="response"><input type="checkbox" name="sw_img" value="rest" />REST</td>
823 <td class="response"><input type="checkbox" name="sw_img" value="spm" />SPM</td>
824 </tr><tr class="oddrow">
825 <td class="response"><input type="checkbox" name="sw_img" value="v3d" />V3D</td>
826 <td class="response"><input type="checkbox" name="sw_img" value="voxbo" />VoxBo</td>
834 <table class="questionaire"><tr>
835 <td class="response"><input type="checkbox" name="sw_datamanage" value="xnat" />XNAT/PyXNAT/...</td>
836 <td class="response"><input type="checkbox" name="sw_datamanage" value="hid" />Human Imaging Database (HID)</td>
839 Neural systems modeling
840 ~~~~~~~~~~~~~~~~~~~~~~~
844 <table class="questionaire"><tr>
845 <td class="response"><input type="checkbox" name="sw_neusys" value="brian" />Brian</td>
846 <td class="response"><input type="checkbox" name="sw_neusys" value="ecanse" />Siemens ECANSE</td>
847 <td class="response"><input type="checkbox" name="sw_neusys" value="emergent" />Emergent NNSS</td>
848 <td class="response"><input type="checkbox" name="sw_neusys" value="genesis" />Genesis</td>
849 <td class="response"><input type="checkbox" name="sw_neusys" value="iNVT" />iNVT</td>
850 <td class="response"><input type="checkbox" name="sw_neusys" value="iqr" />iqr</td>
851 </tr><tr class="oddrow">
852 <td class="response"><input type="checkbox" name="sw_neusys" value="moose" />Moose</td>
853 <td class="response"><input type="checkbox" name="sw_neusys" value="nengo" />Nengo</td>
854 <td class="response"><input type="checkbox" name="sw_neusys" value="nest" />NEST</td>
855 <td class="response"><input type="checkbox" name="sw_neusys" value="neuroml" />NeuroML</td>
856 <td class="response"><input type="checkbox" name="sw_neusys" value="neuron" />NEURON</td>
857 <td class="response"><input type="checkbox" name="sw_neusys" value="neurosolutions" />NeuroSolutions</td>
859 <td class="response"><input type="checkbox" name="sw_neusys" value="pcsim" />PCSIM</td>
860 <td class="response"><input type="checkbox" name="sw_neusys" value="peltarion" />Peltarion</td>
861 <td class="response"><input type="checkbox" name="sw_neusys" value="psics" />PSICS</td>
862 <td class="response"><input type="checkbox" name="sw_neusys" value="pynn" />PyNN</td>
863 <td class="response"><input type="checkbox" name="sw_neusys" value="snnap" />SNNAP</td>
864 <td class="response"><input type="checkbox" name="sw_neusys" value="snns" />SNNS</td>
865 </tr><tr class="oddrow">
866 <td class="response"><input type="checkbox" name="sw_neusys" value="topographica" />Topographica</td>
867 <td class="response"><input type="checkbox" name="sw_neusys" value="xnbc" />XNBC</td>
868 <td class="response"><input type="checkbox" name="sw_neusys" value="xpp" />XPP/XPPAUT</td>
871 Electrophysiology, MEG/EEG
872 ~~~~~~~~~~~~~~~~~~~~~~~~~~
876 <table class="questionaire"><tr>
877 <td class="response"><input type="checkbox" name="sw_electro" value="asa" />ASA</td>
878 <td class="response"><input type="checkbox" name="sw_electro" value="besa" />BESA</td>
879 <td class="response"><input type="checkbox" name="sw_electro" value="biosig" />BioSig</td>
880 <td class="response"><input type="checkbox" name="sw_electro" value="brainbay" />BrainBay</td>
881 <td class="response"><input type="checkbox" name="sw_electro" value="brainstorm" />BrainStorm</td>
882 <td class="response"><input type="checkbox" name="sw_electro" value="brainsuite" />BrainSuite</td>
883 </tr><tr class="oddrow">
884 <td class="response"><input type="checkbox" name="sw_electro" value="brainvisionanalyzer" />Brainvision Analyzer</td>
885 <td class="response"><input type="checkbox" name="sw_electro" value="chronus" />Chronux</td>
886 <td class="response"><input type="checkbox" name="sw_electro" value="eeglab" />EEGLAB</td>
887 <td class="response"><input type="checkbox" name="sw_electro" value="elekta" />Elekta Neuromag</td>
888 <td class="response"><input type="checkbox" name="sw_electro" value="emse" />EMSE</td>
889 <td class="response"><input type="checkbox" name="sw_electro" value="fieldtrip" />Fieldtrip</td>
891 <td class="response"><input type="checkbox" name="sw_electro" value="fmatoolbox" />FMAToolbox</td>
892 <td class="response"><input type="checkbox" name="sw_electro" value="klustakwik" />KlustaKwik</td>
893 <td class="response"><input type="checkbox" name="sw_electro" value="klusters" />Klusters</td>
894 <td class="response"><input type="checkbox" name="sw_electro" value="loreta" />LORETA/sLORETA</td>
895 <td class="response"><input type="checkbox" name="sw_electro" value="mclust" />MClust</td>
896 <td class="response"><input type="checkbox" name="sw_electro" value="mne" />MNE suite</td>
897 </tr><tr class="oddrow">
898 <td class="response"><input type="checkbox" name="sw_electro" value="ndmanager" />NDManager</td>
899 <td class="response"><input type="checkbox" name="sw_electro" value="neuroexplorer" />NeuroExplorer</td>
900 <td class="response"><input type="checkbox" name="sw_electro" value="neuroscan" />Neuroscan</td>
901 <td class="response"><input type="checkbox" name="sw_electro" value="neuroscope" />NeuroScope</td>
902 <td class="response"><input type="checkbox" name="sw_electro" value="neuroshare" />Neuroshare</td>
903 <td class="response"><input type="checkbox" name="sw_electro" value="openeeg" />OpenEEG</td>
905 <td class="response"><input type="checkbox" name="sw_electro" value="openelectrophy" />Openelectrophy</td>
906 <td class="response"><input type="checkbox" name="sw_electro" value="openmeeg" />OpenMEEG</td>
907 <td class="response"><input type="checkbox" name="sw_electro" value="plexon" />Plexon</td>
908 <td class="response"><input type="checkbox" name="sw_electro" value="relacs" />Relacs</td>
909 <td class="response"><input type="checkbox" name="sw_electro" value="svarog" />Svarog</td>
910 <td class="response"><input type="checkbox" name="sw_electro" value="rtxi" />RTXI</td>
912 <td class="response"><input type="checkbox" name="sw_electro" value="trellis" />Trellis-neuro</td>
915 Brain-computer interface
916 ~~~~~~~~~~~~~~~~~~~~~~~~
920 <table class="questionaire"><tr>
921 <td class="response"><input type="checkbox" name="sw_bci" value="bci2000" />BCI2000</td>
922 <td class="response"><input type="checkbox" name="sw_bci" value="openvibe" />OpenVIBE</td>
923 <td class="response"><input type="checkbox" name="sw_bci" value="pyff" />Pyff</td>
926 Hardware interface/Data acquisition
927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
931 <table class="questionaire"><tr>
932 <td class="response"><input type="checkbox" name="sw_acq" value="comedi" />Comedi</td>
933 <td class="response"><input type="checkbox" name="sw_acq" value="epics" />EPICS</td>
934 <td class="response"><input type="checkbox" name="sw_acq" value="mx" />MX</td>
942 <table class="questionaire"><tr>
943 <td class="response"><input type="checkbox" name="sw_rt" value="rtai" />RTAI</td>
944 <td class="response"><input type="checkbox" name="sw_rt" value="xenomai" />Xenomai</td>
945 <td class="response"><input type="checkbox" name="sw_rt" value="rtlinux" />RTLinux</td>
946 <td class="response"><input type="checkbox" name="sw_rt" value="preempt_rt" />PREEMPT_RT</td>
949 Psychophysics/Experiment control
950 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
954 <table class="questionaire"><tr>
955 <td class="response"><input type="checkbox" name="sw_psychphys" value="cogent" />Cogent</td>
956 <td class="response"><input type="checkbox" name="sw_psychphys" value="dmdx" />DMDX</td>
957 <td class="response"><input type="checkbox" name="sw_psychphys" value="eprime" />E-Prime</td>
958 <td class="response"><input type="checkbox" name="sw_psychphys" value="opensesame" />OpenSesame</td>
959 <td class="response"><input type="checkbox" name="sw_psychphys" value="presentation" />Presentation</td>
960 <td class="response"><input type="checkbox" name="sw_psychphys" value="psychopy" />PsychoPy</td>
961 <td class="response"><input type="checkbox" name="sw_psychphys" value="psychtoolbox" />Psychtoolbox</td>
962 </tr><tr class="oddrow">
963 <td class="response"><input type="checkbox" name="sw_psychphys" value="psyscope" />PsyScope</td>
964 <td class="response"><input type="checkbox" name="sw_psychphys" value="psytoolkit" />Psytoolkit</td>
965 <td class="response"><input type="checkbox" name="sw_psychphys" value="pyepl" />PyEPL</td>
966 <td class="response"><input type="checkbox" name="sw_psychphys" value="superlab" />SuperLab</td>
967 <td class="response"><input type="checkbox" name="sw_psychphys" value="tscope" />Tscope</td>
968 <td class="response"><input type="checkbox" name="sw_psychphys" value="visionegg" />VisionEgg</td>
976 <table class="questionaire"><tr>
977 <td class="response"><input type="checkbox" name="sw_other" value="othersw" />
978 <input name="sw_other_name" type="text" size="40" maxlength="200"> <span style="font-size:70%">(comma-separated list)</span></td>
981 ---------------------------------------------------------------
985 <!-- <input id="submit_button" value="Submit survey" type="submit">
986 <div id="server_response"></div>