2 Scientific software usage in neuroscience research
3 ==================================================
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10 answer as many questions as you can, but don't worry if you cannot answer all
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12 For feedback email team@neuro.debian.net
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71 Which country are you working in?
75 </td><td class="response">
78 :file: select_country.inc
84 Where are you working?
88 </td><td class="response">
89 <select name="bg_employer" size="1">
90 <option value="none" selected="selected" label="Select an option">Select an option</option>
91 <option value="edu_priv" label="Higher education (privately funded)">Higher education (privately funded)</option>
92 <option value="edu_pub" label="Higher education (publicly funded)">Higher education (publicly funded)</option>
93 <option value="research_priv" label="Research institution (privately funded)">Research institution (privately funded)</option>
94 <option value="research_pub" label="Research institution (publicly funded)">Research institution (publicly funded)</option>
95 <option value="company" label="Company">Company</option>
97 </td></tr><tr class="oddrow"><td>
99 What is your position?
103 </td><td class="response">
104 <select name="bg_position" size="1">
105 <option value="none" selected="selected" label="Select an option">Select an option</option>
106 <option value="undergrad" label="Undergraduate student">Undergraduate student</option>
107 <option value="graduate" label="PhD student">PhD student</option>
108 <option value="postdoc" label="Postdoc">Postdoc</option>
109 <option value="professor" label="Professor/Supervisor">Professor/Supervisor</option>
110 <option value="ra" label="Research assistant">Research assistant</option>
111 <option value="researcher" label="Other researcher">Other researcher</option>
112 <option value="sysadmin" label="System administrator">System administrator</option>
116 What type of data are you working with? Please check all items that apply.
120 </td><td class="response">
122 <input type="checkbox" name="bg_datamod" value="behav" />Behavioral<br />
123 <input type="checkbox" name="bg_datamod" value="genetic" />Genetic<br />
124 <input type="checkbox" name="bg_datamod" value="mri" />MRI/fMRI/DTI<br />
125 <input type="checkbox" name="bg_datamod" value="meeg" />EEG/MEG<br />
126 <input type="checkbox" name="bg_datamod" value="pet" />PET/SPECT<br />
128 <input type="checkbox" name="bg_datamod" value="ephys" />Electrophysiology<br />
129 <input type="checkbox" name="bg_datamod" value="spectro" />Microspectroscopy<br />
130 <input type="checkbox" name="bg_datamod" value="simulation" />Computational modeling/Simulations<br />
131 <input type="checkbox" name="bg_datamod" value="otherdm" />
132 <input name="bg_datamod_other" type="text" size="20" maxlength="40">
134 </td></tr><tr class="oddrow"><td>
136 Are you developing software that is intended to be used by other researchers?
140 </td><td class="response">
141 <span><input type="radio" name="bg_developer" value="yes" />Yes</span>
142 <span><input type="radio" name="bg_developer" value="no" checked="checked" />No</span>
147 Personal scientific software environment
148 ----------------------------------------
150 Here are a few questions about your personal scientific software environment
151 for research activities like data acquisition, computational modeling, and data
152 analysis. You might be running this on your laptop, desktop, personal
153 workstation or any other machine where **you decide** what software you are
154 using, and you typically also have permission to **install it yourself**. If
155 you are operating different environments, please describe the one that you find
156 most productive for your research purposes. If you don't have a machine that
157 you administer yourself, instead, please indicate what kind of scientific
158 software environment you would like to be doing your research in.
166 What fraction of your research activity time do you spend in this software
167 environment as opposed to any other environment that you might have access to?
171 </td><td class="response">
172 <select name="pers_time" size="1">
173 <option value="none" selected="selected" label="Select an option">Select an option</option>
174 <option value="notime" label="None/I don't have this environment">None/I don't have this environment</option>
175 <option value="little" label="Less then half of the time">Less then half of the time</option>
176 <option value="most" label="More than half of the time">More than half of the time</option>
177 <option value="always" label="All of the time">All of the time</option>
181 What type of hardware are you using?
185 </td><td class="response">
186 <select name="pers_hardware" size="1">
187 <option value="none" selected="selected" label="Select an option">Select an option</option>
188 <option value="laptop" label="Laptop/Portable device">Laptop/Portable device</option>
189 <option value="desktop" label="Commodity desktop">Commodity desktop</option>
190 <option value="workstation" label="High-performance workstation">High-performance workstation</option>
191 <option value="cluster" label="Compute cluster">Compute cluster</option>
192 <option value="grid" label="Grid/Cloud-computing facility">Grid/Cloud-computing facility</option>
194 </td></tr><tr class="oddrow"><td>
196 What operating system is this environment running on?
200 </td><td class="response">
201 <select name="pers_os" size="1">
204 :file: select_os_options.inc
211 How much time do you spend each month on maintaining this environment? This
212 includes the time spent on operating system (security) upgrades, as well as
213 installing and updating scientific software.
217 </td><td class="response">
218 <input name="pers_maint_time" type="text" size="3" maxlength="3"> hours per month
223 ---------------------------------------------------------------
225 Please indicate how much you agree to the following statements.
230 <tr><th colspan="2" style="text-align:left;font-weight:normal">
232 *I prefer this particular scientific software environment because ...*
236 </th></tr><tr class="oddrow">
239 ... the developers of an important research software recommend it
243 </td><td class="response">
244 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r1" value="3" /></div>
245 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r1" value="2" /></div>
246 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r1" value="1" /></div>
247 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r1" value="0" /></div>
248 </td></tr><tr><td class="task">
251 ... of the variety of available research software for this environment
255 </td><td class="response">
256 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r2" value="3" /></div>
257 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r2" value="2" /></div>
258 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r2" value="1" /></div>
259 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r2" value="0" /></div>
260 </td></tr><tr class="oddrow"><td class="task">
263 ... of the availability of commercial support
267 </td><td class="response">
268 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r3" value="3" /></div>
269 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r3" value="2" /></div>
270 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r3" value="1" /></div>
271 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r3" value="0" /></div>
272 </td></tr><tr><td class="task">
275 ... many of my colleagues use something similar
279 </td><td class="response">
280 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r4" value="3" /></div>
281 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r4" value="2" /></div>
282 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r4" value="1" /></div>
283 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r4" value="0" /></div>
284 </td></tr><tr class="oddrow"><td class="task">
287 ... it is popular and I can get solutions for problems from web forums and mailing lists
291 </td><td class="response">
292 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r5" value="3" /></div>
293 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r5" value="2" /></div>
294 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r5" value="1" /></div>
295 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r5" value="0" /></div>
296 </td></tr><tr><td class="task">
299 ... I rely on a particular application that runs in this environment only
303 </td><td class="response">
304 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r6" value="3" /></div>
305 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r6" value="2" /></div>
306 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r6" value="1" /></div>
307 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r6" value="0" /></div>
308 </td></tr><tr class="oddrow"><td class="task">
311 ... it has adequate support for all required hardware
315 </td><td class="response">
316 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r7" value="3" /></div>
317 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r7" value="2" /></div>
318 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r7" value="1" /></div>
319 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r7" value="0" /></div>
320 </td></tr><tr><td class="task">
323 ... I have the necessary technical skills to maintain this environment myself
327 </td><td class="response">
328 <div class="rating">Definitely agree<br /><input type="radio" name="pers_r8" value="3" /></div>
329 <div class="rating">Mostly agree<br /><input type="radio" name="pers_r8" value="2" /></div>
330 <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r8" value="1" /></div>
331 <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r8" value="0" /></div>
337 Managed scientific software environment
338 ---------------------------------------
340 The following questions are about a managed environment of scientific software
341 that is provided to you to carry out computing and data analysis. Such an
342 environment is typically managed by **dedicated IT staff**, and **you don't
343 have permissions to install arbitrary software**. This environment may be
344 shared by many researchers in a lab, a whole research institution, or even be
345 publicly accessible. If you have access to multiple environments of this kind,
346 please describe the one that offers most support for your particular research
352 <table class="questionaire">
356 What fraction of time do you spend in this environment during your research
361 </td><td class="response">
362 <select name="man_time" size="1">
363 <option value="none" selected="selected" label="Select an option">Select an option</option>
364 <option value="notime" label="None/I don't use this">None/I don't use this</option>
365 <option value="little" label="Less then half of the time">Less then half of the time</option>
366 <option value="most" label="More than half of the time">More than half of the time</option>
367 <option value="always" label="All of the time">All of the time</option>
371 What type of hardware is this software environment running on?
375 </td><td class="response">
376 <select name="man_hardware" size="1">
377 <option value="none" selected="selected" label="Select an option">Select an option</option>
378 <option value="laptop" label="Laptop/Portable device">Laptop/Portable device</option>
379 <option value="desktop" label="Commodity desktop">Commodity desktop</option>
380 <option value="workstation" label="High-performance workstation">High-performance workstation</option>
381 <option value="cluster" label="Compute cluster">Compute cluster</option>
382 <option value="grid" label="Grid/Cloud-computing facility">Grid/Cloud-computing facility</option>
384 </td></tr><tr class="oddrow"><td>
387 What operating system is this environment running on?
391 </td><td class="response">
392 <select name="man_os" size="1">
395 :file: select_os_options.inc
404 ---------------------------------------------------------------
406 How much do you agree to the following statements?
414 This environment provides me with the best available tools for my research
418 </td><td class="response">
419 <div class="rating">Definitely agree<br /><input type="radio" name="man_r1" value="3" /></div>
420 <div class="rating">Mostly agree<br /><input type="radio" name="man_r1" value="2" /></div>
421 <div class="rating">Mostly disagree<br /><input type="radio" name="man_r1" value="1" /></div>
422 <div class="rating">Definitely disagree<br /><input type="radio" name="man_r1" value="0" /></div>
423 </td></tr><tr><td class="task">
425 The support staff solves all my technical problems and addresses my demands in
430 </td><td class="response">
431 <div class="rating">Definitely agree<br /><input type="radio" name="man_r2" value="3" /></div>
432 <div class="rating">Mostly agree<br /><input type="radio" name="man_r2" value="2" /></div>
433 <div class="rating">Mostly disagree<br /><input type="radio" name="man_r2" value="1" /></div>
434 <div class="rating">Definitely disagree<br /><input type="radio" name="man_r2" value="0" /></div>
435 </td></tr><tr class="oddrow"><td class="task">
437 There are always enough licenses for essential commercial software tools
441 </td><td class="response">
442 <div class="rating">Definitely agree<br /><input type="radio" name="man_r3" value="3" /></div>
443 <div class="rating">Mostly agree<br /><input type="radio" name="man_r3" value="2" /></div>
444 <div class="rating">Mostly disagree<br /><input type="radio" name="man_r3" value="1" /></div>
445 <div class="rating">Definitely disagree<br /><input type="radio" name="man_r3" value="0" /></div>
446 </td></tr><tr><td class="task">
448 I need to deploy additional software to be able to perform my research in this environment
452 </td><td class="response">
453 <div class="rating">Definitely agree<br /><input type="radio" name="man_r4" value="3" /></div>
454 <div class="rating">Mostly agree<br /><input type="radio" name="man_r4" value="2" /></div>
455 <div class="rating">Mostly disagree<br /><input type="radio" name="man_r4" value="1" /></div>
456 <div class="rating">Definitely disagree<br /><input type="radio" name="man_r4" value="0" /></div>
457 </td></tr><tr class="oddrow"><td class="task">
460 Using this managed environment is more cost effective than operating a suitable
465 </td><td class="response">
466 <div class="rating">Definitely agree<br /><input type="radio" name="man_r5" value="3" /></div>
467 <div class="rating">Mostly agree<br /><input type="radio" name="man_r5" value="2" /></div>
468 <div class="rating">Mostly disagree<br /><input type="radio" name="man_r5" value="1" /></div>
469 <div class="rating">Definitely disagree<br /><input type="radio" name="man_r5" value="0" /></div>
470 </td></tr><tr><td class="task">
481 The following questions are about your usage of systems for hardware
482 virtualization in your research -- so-called **virtual machines**.
483 Virtualization is a technology that allows running more than one operating
484 systems on one machine at the same time.
492 What fraction of your research activity time do you spend in a virtual
493 environment as opposed to any other environment?
497 </td><td class="response">
498 <select name="virt_time" size="1">
499 <option value="none" selected="selected" label="Select an option">Select an option</option>
500 <option value="notime" label="None/I don't use this">None/I don't use this</option>
501 <option value="little" label="Less then half of the time">Less then half of the time</option>
502 <option value="most" label="More than half of the time">More than half of the time</option>
503 <option value="always" label="All of the time">All of the time</option>
505 </td></tr><tr><td class="task">
507 Which products for virtualization are you using?
511 </td><td class="response">
513 <input type="checkbox" name="virt_prod" value="vmware" />VMWare<br />
514 <input type="checkbox" name="virt_prod" value="virtualbox" />VirtualBox<br />
515 <input type="checkbox" name="virt_prod" value="parallels" />Parallels<br />
516 <input type="checkbox" name="virt_prod" value="qemu" />QEMU<br />
518 <input type="checkbox" name="virt_prod" value="virtualpc" />Virtual PC<br />
519 <input type="checkbox" name="virt_prod" value="xen" />Xen<br />
520 <input type="checkbox" name="virt_prod" value="kvm" />KVM<br />
521 <input type="checkbox" name="virt_prod" value="othervm" />
522 <input name="virt_other" type="text" size="20" maxlength="40">
524 </td></tr><tr class="oddrow"><td>
526 What **guest operating system** is running inside virtual machine?
530 </td><td class="response">
531 <select name="virt_guest_os" size="1">
534 :file: select_os_options.inc
541 What **host operating system** are the virtual machines running on?
545 </td><td class="response">
546 <select name="virt_host_os" size="1">
549 :file: select_os_options.inc
556 ---------------------------------------------------------------
558 What are your reasons for employing virtualization in you research?
559 Please indicate how much you agree to the following statements
564 <tr class="oddrow"><td class="task">
566 I can run software that is otherwise incompatible with my system
570 </td><td class="response">
571 <div class="rating">Definitely agree<br /><input type="radio" name="virt_r1" value="3" /></div>
572 <div class="rating">Mostly agree<br /><input type="radio" name="virt_r1" value="2" /></div>
573 <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r1" value="1" /></div>
574 <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r1" value="0" /></div>
575 </td></tr><tr><td class="task">
577 I have the ability to easily create a snapshot of my whole analysis environment
581 </td><td class="response">
582 <div class="rating">Definitely agree<br /><input type="radio" name="virt_r2" value="3" /></div>
583 <div class="rating">Mostly agree<br /><input type="radio" name="virt_r2" value="2" /></div>
584 <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r2" value="1" /></div>
585 <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r2" value="0" /></div>
586 </td></tr><tr class="oddrow"><td class="task">
589 I can take my complete analysis environment with me and run it on different
594 </td><td class="response">
595 <div class="rating">Definitely agree<br /><input type="radio" name="virt_r3" value="3" /></div>
596 <div class="rating">Mostly agree<br /><input type="radio" name="virt_r3" value="2" /></div>
597 <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r3" value="1" /></div>
598 <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r3" value="0" /></div>
599 </td></tr><tr><td class="task">
601 The performance of a virtual machine is sufficient for routine application in my
606 </td><td class="response">
607 <div class="rating">Definitely agree<br /><input type="radio" name="virt_r4" value="3" /></div>
608 <div class="rating">Mostly agree<br /><input type="radio" name="virt_r4" value="2" /></div>
609 <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r4" value="1" /></div>
610 <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r4" value="0" /></div>
616 Resources for scientific software
617 ---------------------------------
619 Where do you obtain scientific software that you employ in your research? Please
620 check all items that apply
624 <table class="questionaire">
626 <td class="response"><input type="checkbox" name="software_resource" value="vendor" /></td><td>
628 Directly from vendor or project website
632 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="retailer" /></td><td>
638 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="os" /></td><td>
640 Comes with the operating system
644 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="cpan" /></td><td>
646 `Comprehensive Perl Archive Network (CPAN) <http://www.cpan.org>`_
650 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="cran" /></td><td>
652 `Comprehensive R Archive Network (CRAN) <http://cran.r-project.org>`_
656 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="epel" /></td><td>
658 `Extra Packages for Enterprise Linux (EPEL) <http://fedoraproject.org/wiki/EPEL>`_
662 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="fink" /></td><td>
664 `Fink <http://www.finkproject.org>`_
668 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="freebsdports" /></td><td>
670 `FreeBSD ports <http://www.freebsd.org/ports/science.html>`_
674 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="incf" /></td><td>
676 `International neuroinformatics Coordinating Facility (INCF) Research Tools <http://www.incf.org/resources/research-tools>`_
680 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="macports" /></td><td>
682 `Macports <http://www.macports.org>`_
686 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="matlabcentral" /></td><td>
688 `Matlab Central <http://www.mathworks.com/matlabcentral>`_
692 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="neurodebian" /></td><td>
694 `NeuroDebian <http://neuro.debian.net>`_
698 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="nitrc" /></td><td>
700 `Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC) <http://www.nitrc.org>`_
704 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="pypi" /></td><td>
706 `Python Package Index (PyPi) <http://pypi.python.org>`_
710 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="pythonbundles" /></td><td>
712 Python bundles: `Enthought Python <http://www.enthought.com/products/index.php>`_, `Python(x,y) <http://www.pythonxy.com/>`_
716 </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="sourceforge" /></td><td>
718 `Sourceforge <http://www.sourceforge.net>`_
722 </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="otherres" /></td><td>
723 <input name="software_resource_other" type="text" size="40" maxlength="200">
729 Please select all software that you are using in your research.
731 Generic computing/scripting/programming environments
732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
736 <table class="questionaire"><tr>
737 <td class="response"><input type="checkbox" name="sw_general" value="cpp" />C/C++</td>
738 <td class="response"><input type="checkbox" name="sw_general" value="fortran" />Fortran</td>
739 <td class="response"><input type="checkbox" name="sw_general" value="idl" />IDL</td>
740 <td class="response"><input type="checkbox" name="sw_general" value="java" />Java</td>
741 <td class="response"><input type="checkbox" name="sw_general" value="labview" />LabVIEW</td>
742 <td class="response"><input type="checkbox" name="sw_general" value="lisrel" />LISREL</td>
743 </tr><tr class="oddrow">
744 <td class="response"><input type="checkbox" name="sw_general" value="maple" />Maple</td>
745 <td class="response"><input type="checkbox" name="sw_general" value="mathcad" />Mathcad</td>
746 <td class="response"><input type="checkbox" name="sw_general" value="mathematica" />Mathematica</td>
747 <td class="response"><input type="checkbox" name="sw_general" value="matlab" />Matlab</td>
748 <td class="response"><input type="checkbox" name="sw_general" value="octave" />Octave</td>
749 <td class="response"><input type="checkbox" name="sw_general" value="perl" />Perl</td>
751 <td class="response"><input type="checkbox" name="sw_general" value="python" />Python</td>
752 <td class="response"><input type="checkbox" name="sw_general" value="r" />R</td>
753 <td class="response"><input type="checkbox" name="sw_general" value="ruby" />Ruby</td>
754 <td class="response"><input type="checkbox" name="sw_general" value="scilab" />Scilab</td>
755 <td class="response"><input type="checkbox" name="sw_general" value="spss" />SPSS</td>
756 <td class="response"><input type="checkbox" name="sw_general" value="scirun" />SCIRun</td>
757 </tr><tr class="oddrow">
758 <td class="response"><input type="checkbox" name="sw_general" value="shell" />Shell scripting</td>
761 Distributed computing - frameworks and controllers
762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
766 <table class="questionaire"><tr>
767 <td class="response"><input type="checkbox" name="sw_dc" value="sge" />SGE</td>
768 <td class="response"><input type="checkbox" name="sw_dc" value="torque" />Torque/OpenPBS/Maui</td>
769 <td class="response"><input type="checkbox" name="sw_dc" value="condor" />Condor</td>
770 <td class="response"><input type="checkbox" name="sw_dc" value="globus" />Globus</td>
771 <td class="response"><input type="checkbox" name="sw_dc" value="mpi" />MPI (any)</td>
772 <td class="response"><input type="checkbox" name="sw_dc" value="ipython" />IPython</td>
780 <table class="questionaire"><tr>
781 <td class="response"><input type="checkbox" name="sw_img" value="3dslicer" />3D Slicer</td>
782 <td class="response"><input type="checkbox" name="sw_img" value="afni" />AFNI</td>
783 <td class="response"><input type="checkbox" name="sw_img" value="aeskulap" />Aeskulap</td>
784 <td class="response"><input type="checkbox" name="sw_img" value="amide" />Amide</td>
785 </tr><tr class="oddrow">
786 <td class="response"><input type="checkbox" name="sw_img" value="birn" />BIRN Tools</td>
787 <td class="response"><input type="checkbox" name="sw_img" value="brainstools" />BRAINS Tools</td>
788 <td class="response"><input type="checkbox" name="sw_img" value="bioimgsuite" />Bioimage Suite</td>
789 <td class="response"><input type="checkbox" name="sw_img" value="brainmap" />BrainMap</td>
791 <td class="response"><input type="checkbox" name="sw_img" value="brainvisa" />BrainVISA/Anatomist</td>
792 <td class="response"><input type="checkbox" name="sw_img" value="brainvoyager" />BrainVoyager</td>
793 <td class="response"><input type="checkbox" name="sw_img" value="cmtk" />CMTK</td>
794 <td class="response"><input type="checkbox" name="sw_img" value="camino" />Camino</td>
795 </tr><tr class="oddrow">
796 <td class="response"><input type="checkbox" name="sw_img" value="caret" />Caret</td>
797 <td class="response"><input type="checkbox" name="sw_img" value="connectomviewer" />ConnectomeViewer</td>
798 <td class="response"><input type="checkbox" name="sw_img" value="dsi" />DSI Studio</td>
799 <td class="response"><input type="checkbox" name="sw_img" value="dtitk" />DTI-TK</td>
801 <td class="response"><input type="checkbox" name="sw_img" value="trackvis" />Diffusion Toolkit/Trackvis</td>
802 <td class="response"><input type="checkbox" name="sw_img" value="fsl" />FSL</td>
803 <td class="response"><input type="checkbox" name="sw_img" value="fiji" />Fiji</td>
804 <td class="response"><input type="checkbox" name="sw_img" value="freesurfer" />FreeSurfer</td>
805 </tr><tr class="oddrow">
806 <td class="response"><input type="checkbox" name="sw_img" value="itksnap" />ITK-SNAP</td>
807 <td class="response"><input type="checkbox" name="sw_img" value="imagej" />ImageJ</td>
808 <td class="response"><input type="checkbox" name="sw_img" value="invesalius" />Invesalius</td>
809 <td class="response"><input type="checkbox" name="sw_img" value="loni" />LONI</td>
811 <td class="response"><input type="checkbox" name="sw_img" value="lipsia" />Lipsia</td>
812 <td class="response"><input type="checkbox" name="sw_img" value="mango" />Mango</td>
813 <td class="response"><input type="checkbox" name="sw_img" value="mipav" />MIPAV/JIST</td>
814 <td class="response"><input type="checkbox" name="sw_img" value="mni" />MNI tools</td>
815 </tr><tr class="oddrow">
816 <td class="response"><input type="checkbox" name="sw_img" value="mricron" />MRIcron</td>
817 <td class="response"><input type="checkbox" name="sw_img" value="mrtrix" />MRtrix</td>
818 <td class="response"><input type="checkbox" name="sw_img" value="mvpa" />Matlab MVPA toolbox</td>
819 <td class="response"><input type="checkbox" name="sw_img" value="nibabel" />NiBabel/PyNIfTI</td>
821 <td class="response"><input type="checkbox" name="sw_img" value="nipy" />NiPy/NiTime/DiPy/NiPype</td>
822 <td class="response"><input type="checkbox" name="sw_img" value="pymvpa" />PyMVPA</td>
823 <td class="response"><input type="checkbox" name="sw_img" value="rest" />REST</td>
824 <td class="response"><input type="checkbox" name="sw_img" value="spm" />SPM</td>
825 </tr><tr class="oddrow">
826 <td class="response"><input type="checkbox" name="sw_img" value="v3d" />V3D</td>
827 <td class="response"><input type="checkbox" name="sw_img" value="voxbo" />VoxBo</td>
835 <table class="questionaire"><tr>
836 <td class="response"><input type="checkbox" name="sw_datamanage" value="xnat" />XNAT/PyXNAT/...</td>
837 <td class="response"><input type="checkbox" name="sw_datamanage" value="hid" />Human Imaging Database (HID)</td>
840 Neural systems modeling
841 ~~~~~~~~~~~~~~~~~~~~~~~
845 <table class="questionaire"><tr>
846 <td class="response"><input type="checkbox" name="sw_neusys" value="brian" />Brian</td>
847 <td class="response"><input type="checkbox" name="sw_neusys" value="ecanse" />Siemens ECANSE</td>
848 <td class="response"><input type="checkbox" name="sw_neusys" value="emergent" />Emergent NNSS</td>
849 <td class="response"><input type="checkbox" name="sw_neusys" value="genesis" />Genesis</td>
850 <td class="response"><input type="checkbox" name="sw_neusys" value="iNVT" />iNVT</td>
851 <td class="response"><input type="checkbox" name="sw_neusys" value="iqr" />iqr</td>
852 </tr><tr class="oddrow">
853 <td class="response"><input type="checkbox" name="sw_neusys" value="moose" />Moose</td>
854 <td class="response"><input type="checkbox" name="sw_neusys" value="nengo" />Nengo</td>
855 <td class="response"><input type="checkbox" name="sw_neusys" value="nest" />NEST</td>
856 <td class="response"><input type="checkbox" name="sw_neusys" value="neuroml" />NeuroML</td>
857 <td class="response"><input type="checkbox" name="sw_neusys" value="neuron" />NEURON</td>
858 <td class="response"><input type="checkbox" name="sw_neusys" value="neurosolutions" />NeuroSolutions</td>
860 <td class="response"><input type="checkbox" name="sw_neusys" value="pcsim" />PCSIM</td>
861 <td class="response"><input type="checkbox" name="sw_neusys" value="peltarion" />Peltarion</td>
862 <td class="response"><input type="checkbox" name="sw_neusys" value="psics" />PSICS</td>
863 <td class="response"><input type="checkbox" name="sw_neusys" value="pynn" />PyNN</td>
864 <td class="response"><input type="checkbox" name="sw_neusys" value="snnap" />SNNAP</td>
865 <td class="response"><input type="checkbox" name="sw_neusys" value="snns" />SNNS</td>
866 </tr><tr class="oddrow">
867 <td class="response"><input type="checkbox" name="sw_neusys" value="topographica" />Topographica</td>
868 <td class="response"><input type="checkbox" name="sw_neusys" value="xnbc" />XNBC</td>
869 <td class="response"><input type="checkbox" name="sw_neusys" value="xpp" />XPP/XPPAUT</td>
872 Electrophysiology, MEG/EEG
873 ~~~~~~~~~~~~~~~~~~~~~~~~~~
877 <table class="questionaire"><tr>
878 <td class="response"><input type="checkbox" name="sw_electro" value="asa" />ASA</td>
879 <td class="response"><input type="checkbox" name="sw_electro" value="besa" />BESA</td>
880 <td class="response"><input type="checkbox" name="sw_electro" value="biosig" />BioSig</td>
881 <td class="response"><input type="checkbox" name="sw_electro" value="brainstorm" />BrainStorm</td>
882 <td class="response"><input type="checkbox" name="sw_electro" value="brainsuite" />BrainSuite</td>
883 <td class="response"><input type="checkbox" name="sw_electro" value="brainvisionanalyzer" />Brainvision Analyzer</td>
884 </tr><tr class="oddrow">
885 <td class="response"><input type="checkbox" name="sw_electro" value="chronus" />Chronux</td>
886 <td class="response"><input type="checkbox" name="sw_electro" value="eeglab" />EEGLAB</td>
887 <td class="response"><input type="checkbox" name="sw_electro" value="elekta" />Elekta Neuromag</td>
888 <td class="response"><input type="checkbox" name="sw_electro" value="emse" />EMSE</td>
889 <td class="response"><input type="checkbox" name="sw_electro" value="fieldtrip" />Fieldtrip</td>
890 <td class="response"><input type="checkbox" name="sw_electro" value="fmatoolbox" />FMAToolbox</td>
892 <td class="response"><input type="checkbox" name="sw_electro" value="klustakwik" />KlustaKwik</td>
893 <td class="response"><input type="checkbox" name="sw_electro" value="klusters" />Klusters</td>
894 <td class="response"><input type="checkbox" name="sw_electro" value="loreta" />LORETA/sLORETA</td>
895 <td class="response"><input type="checkbox" name="sw_electro" value="mclust" />MClust</td>
896 <td class="response"><input type="checkbox" name="sw_electro" value="mne" />MNE suite</td>
897 <td class="response"><input type="checkbox" name="sw_electro" value="ndmanager" />NDManager</td>
898 </tr><tr class="oddrow">
899 <td class="response"><input type="checkbox" name="sw_electro" value="neuroexplorer" />NeuroExplorer</td>
900 <td class="response"><input type="checkbox" name="sw_electro" value="neuroscan" />Neuroscan</td>
901 <td class="response"><input type="checkbox" name="sw_electro" value="neuroscope" />NeuroScope</td>
902 <td class="response"><input type="checkbox" name="sw_electro" value="neuroshare" />Neuroshare</td>
903 <td class="response"><input type="checkbox" name="sw_electro" value="openelectrophy" />Openelectrophy</td>
904 <td class="response"><input type="checkbox" name="sw_electro" value="openmeeg" />OpenMEEG</td>
906 <td class="response"><input type="checkbox" name="sw_electro" value="plexon" />Plexon</td>
907 <td class="response"><input type="checkbox" name="sw_electro" value="relacs" />Relacs</td>
908 <td class="response"><input type="checkbox" name="sw_electro" value="rtxi" />RTXI</td>
909 <td class="response"><input type="checkbox" name="sw_electro" value="trellis" />Trellis-neuro</td>
912 Brain-computer interface
913 ~~~~~~~~~~~~~~~~~~~~~~~~
917 <table class="questionaire"><tr>
918 <td class="response"><input type="checkbox" name="sw_bci" value="bci2000" />BCI2000</td>
919 <td class="response"><input type="checkbox" name="sw_bci" value="openvibe" />OpenVIBE</td>
920 <td class="response"><input type="checkbox" name="sw_bci" value="pyff" />Pyff</td>
923 Hardware interface/Data acquisition
924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
928 <table class="questionaire"><tr>
929 <td class="response"><input type="checkbox" name="sw_acq" value="comedi" />Comedi</td>
930 <td class="response"><input type="checkbox" name="sw_acq" value="epics" />EPICS</td>
931 <td class="response"><input type="checkbox" name="sw_acq" value="mx" />MX</td>
939 <table class="questionaire"><tr>
940 <td class="response"><input type="checkbox" name="sw_rt" value="rtai" />RTAI</td>
941 <td class="response"><input type="checkbox" name="sw_rt" value="xenomai" />Xenomai</td>
942 <td class="response"><input type="checkbox" name="sw_rt" value="rtlinux" />RTLinux</td>
943 <td class="response"><input type="checkbox" name="sw_rt" value="preempt_rt" />PREEMPT_RT</td>
946 Psychophysics/Experiment control
947 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
951 <table class="questionaire"><tr>
952 <td class="response"><input type="checkbox" name="sw_psychphys" value="cogent" />Cogent</td>
953 <td class="response"><input type="checkbox" name="sw_psychphys" value="dmdx" />DMDX</td>
954 <td class="response"><input type="checkbox" name="sw_psychphys" value="eprime" />E-Prime</td>
955 <td class="response"><input type="checkbox" name="sw_psychphys" value="opensesame" />OpenSesame</td>
956 <td class="response"><input type="checkbox" name="sw_psychphys" value="presentation" />Presentation</td>
957 <td class="response"><input type="checkbox" name="sw_psychphys" value="psychopy" />PsychoPy</td>
958 <td class="response"><input type="checkbox" name="sw_psychphys" value="psychtoolbox" />Psychtoolbox</td>
959 </tr><tr class="oddrow">
960 <td class="response"><input type="checkbox" name="sw_psychphys" value="psyscope" />PsyScope</td>
961 <td class="response"><input type="checkbox" name="sw_psychphys" value="psytoolkit" />Psytoolkit</td>
962 <td class="response"><input type="checkbox" name="sw_psychphys" value="pyepl" />PyEPL</td>
963 <td class="response"><input type="checkbox" name="sw_psychphys" value="superlab" />SuperLab</td>
964 <td class="response"><input type="checkbox" name="sw_psychphys" value="tscope" />Tscope</td>
965 <td class="response"><input type="checkbox" name="sw_psychphys" value="visionegg" />VisionEgg</td>
973 <table class="questionaire"><tr>
974 <td class="response"><input type="checkbox" name="sw_other" value="othersw" />
975 <input name="sw_other_name" type="text" size="40" maxlength="200"> <span style="font-size:70%">(comma-separated list)</span></td>
978 ---------------------------------------------------------------
982 <!-- <input id="submit_button" value="Submit survey" type="submit">
983 <div id="server_response"></div>