1 #ifndef SUMMARYCOMMAND_H
2 #define SUMMARYCOMMAND_H
7 * Created by Sarah Westcott on 1/2/09.
8 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
12 #include "command.hpp"
13 #include "sabundvector.hpp"
14 #include "inputdata.h"
15 #include "calculator.h"
17 #include "validcalculator.h"
21 class SummaryCommand : public Command {
24 SummaryCommand(string);
30 GlobalData* globaldata;
32 vector<Calculator*> sumCalculators;
34 ValidCalculators* validCalculator;
39 set<string> labels; //holds labels to be used
40 string label, calc, outputDir;
41 vector<string> Estimators;
42 vector<string> inputFileNames;
43 vector<string> groups;
45 vector<string> parseSharedFile(string);