1 // ***************************************************************************
2 // bamtools_resolve.h (c) 2011 Derek Barnett
3 // Marth Lab, Department of Biology, Boston College
4 // ---------------------------------------------------------------------------
5 // Last modified: 23 June 2011
6 // ---------------------------------------------------------------------------
7 // Resolves paired-end reads (marking the IsProperPair flag as needed).
8 // ***************************************************************************
10 #ifndef BAMTOOLS_RESOLVE_H
11 #define BAMTOOLS_RESOLVE_H
13 #include "bamtools_tool.h"
17 class ResolveTool : public AbstractTool {
25 int Run(int argc, char* argv[]);
28 struct ResolveSettings;
29 ResolveSettings* m_settings;
31 struct ResolveToolPrivate;
32 ResolveToolPrivate* m_impl;
34 struct ReadNamesFileReader;
35 struct ReadNamesFileWriter;
36 struct StatsFileReader;
37 struct StatsFileWriter;
40 } // namespace BamTools
42 #endif // BAMTOOLS_RESOLVE_H