1 // ***************************************************************************
2 // bamtools_resolve.h (c) 2011 Derek Barnett
3 // Marth Lab, Department of Biology, Boston College
4 // All rights reserved.
5 // ---------------------------------------------------------------------------
6 // Last modified: 23 June 2011
7 // ---------------------------------------------------------------------------
8 // Resolves paired-end reads (marking the IsProperPair flag as needed).
9 // ***************************************************************************
11 #ifndef BAMTOOLS_RESOLVE_H
12 #define BAMTOOLS_RESOLVE_H
14 #include "bamtools_tool.h"
18 class ResolveTool : public AbstractTool {
26 int Run(int argc, char* argv[]);
29 struct ResolveSettings;
30 ResolveSettings* m_settings;
32 struct ResolveToolPrivate;
33 ResolveToolPrivate* m_impl;
35 struct ReadNamesFileReader;
36 struct ReadNamesFileWriter;
37 struct StatsFileReader;
38 struct StatsFileWriter;
41 } // namespace BamTools
43 #endif // BAMTOOLS_RESOLVE_H