1 // ***************************************************************************
2 // bamtools_index.h (c) 2010 Derek Barnett, Erik Garrison
3 // Marth Lab, Department of Biology, Boston College
4 // All rights reserved.
5 // ---------------------------------------------------------------------------
6 // Last modified: 7 April 2011
7 // ---------------------------------------------------------------------------
8 // Creates a BAM index file
9 // ***************************************************************************
11 #ifndef BAMTOOLS_INDEX_H
12 #define BAMTOOLS_INDEX_H
14 #include "bamtools_tool.h"
18 class IndexTool : public AbstractTool {
26 int Run(int argc, char* argv[]);
30 IndexSettings* m_settings;
32 struct IndexToolPrivate;
33 IndexToolPrivate* m_impl;
36 } // namespace BamTools
38 #endif // BAMTOOLS_INDEX_H