1 // ***************************************************************************
2 // bamtools_coverage.h (c) 2010 Derek Barnett, Erik Garrison
3 // Marth Lab, Department of Biology, Boston College
4 // All rights reserved.
5 // ---------------------------------------------------------------------------
6 // Last modified: 1 August 2010
7 // ---------------------------------------------------------------------------
8 // Prints coverage data for a single BAM file
9 // ***************************************************************************
11 #ifndef BAMTOOLS_COVERAGE_H
12 #define BAMTOOLS_COVERAGE_H
14 #include "bamtools_tool.h"
18 class CoverageTool : public AbstractTool {
26 int Run(int argc, char* argv[]);
29 struct CoverageSettings;
30 CoverageSettings* m_settings;
32 struct CoverageToolPrivate;
33 CoverageToolPrivate* m_impl;
36 } // namespace BamTools
38 #endif // BAMTOOLS_COVERAGE_H