1 // ***************************************************************************
2 // bamtools_coverage.h (c) 2010 Derek Barnett, Erik Garrison
3 // Marth Lab, Department of Biology, Boston College
4 // All rights reserved.
5 // ---------------------------------------------------------------------------
6 // Last modified: 1 June 2010
7 // ---------------------------------------------------------------------------
8 // Prints coverage statistics for a single BAM file
10 // ** Expand to multiple??
12 // ***************************************************************************
14 #ifndef BAMTOOLS_COVERAGE_H
15 #define BAMTOOLS_COVERAGE_H
17 #include "bamtools_tool.h"
21 class CoverageTool : public AbstractTool {
29 int Run(int argc, char* argv[]);
32 struct CoverageSettings;
33 CoverageSettings* m_settings;
36 } // namespace BamTools
38 #endif // BAMTOOLS_COVERAGE_H