1 // ***************************************************************************
2 // bamtools_coverage.h (c) 2010 Derek Barnett, Erik Garrison
3 // Marth Lab, Department of Biology, Boston College
4 // ---------------------------------------------------------------------------
5 // Last modified: 1 August 2010
6 // ---------------------------------------------------------------------------
7 // Prints coverage data for a single BAM file
8 // ***************************************************************************
10 #ifndef BAMTOOLS_COVERAGE_H
11 #define BAMTOOLS_COVERAGE_H
13 #include "bamtools_tool.h"
17 class CoverageTool : public AbstractTool {
25 int Run(int argc, char* argv[]);
28 struct CoverageSettings;
29 CoverageSettings* m_settings;
31 struct CoverageToolPrivate;
32 CoverageToolPrivate* m_impl;
35 } // namespace BamTools
37 #endif // BAMTOOLS_COVERAGE_H