1 // ***************************************************************************
2 // bamtools_count.h (c) 2010 Derek Barnett, Erik Garrison
3 // Marth Lab, Department of Biology, Boston College
4 // All rights reserved.
5 // ---------------------------------------------------------------------------
6 // Last modified: 7 April 2011
7 // ---------------------------------------------------------------------------
8 // Prints alignment count for BAM file(s)
9 // ***************************************************************************
11 #ifndef BAMTOOLS_COUNT_H
12 #define BAMTOOLS_COUNT_H
14 #include "bamtools_tool.h"
18 class CountTool : public AbstractTool {
26 int Run(int argc, char* argv[]);
30 CountSettings* m_settings;
32 struct CountToolPrivate;
33 CountToolPrivate* m_impl;
36 } // namespace BamTools
38 #endif // BAMTOOLS_COUNT_H