1 // ***************************************************************************
2 // bamtools_count.h (c) 2010 Derek Barnett, Erik Garrison
3 // Marth Lab, Department of Biology, Boston College
4 // ---------------------------------------------------------------------------
5 // Last modified: 7 April 2011
6 // ---------------------------------------------------------------------------
7 // Prints alignment count for BAM file(s)
8 // ***************************************************************************
10 #ifndef BAMTOOLS_COUNT_H
11 #define BAMTOOLS_COUNT_H
13 #include "bamtools_tool.h"
17 class CountTool : public AbstractTool {
25 int Run(int argc, char* argv[]);
29 CountSettings* m_settings;
31 struct CountToolPrivate;
32 CountToolPrivate* m_impl;
35 } // namespace BamTools
37 #endif // BAMTOOLS_COUNT_H