1 # ==========================
2 # BamTools CMakeLists.txt
3 # (c) 2010 Derek Barnett
6 # ==========================
9 include_directories( ${BamTools_SOURCE_DIR}/src )
11 # add compiler definitions
12 add_definitions( -DBAMTOOLS_API_LIBRARY ) # (for proper exporting of library symbols)
13 add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
15 # fetch all internal source files
16 add_subdirectory ( internal )
18 # make list of all API source files
19 set( BamToolsAPISources
28 SamReadGroupDictionary.cpp
30 SamSequenceDictionary.cpp
34 # create main BamTools API shared library
35 add_library( BamTools SHARED ${BamToolsAPISources} )
36 set_target_properties( BamTools PROPERTIES
38 OUTPUT_NAME "bamtools" )
40 # create main BamTools API static library
41 add_library( BamTools-static STATIC ${BamToolsAPISources} )
42 set_target_properties( BamTools-static PROPERTIES
43 OUTPUT_NAME "bamtools"
46 # link libraries automatically with zlib (and Winsock2, if applicable)
48 set( APILibs z ws2_32 )
53 target_link_libraries( BamTools ${APILibs} )
54 target_link_libraries( BamTools-static ${APILibs} )
56 # set library install destinations
57 install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
58 install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
61 include(../ExportHeader.cmake)
62 set(ApiIncludeDir "api")
63 ExportHeader(APIHeaders api_global.h ${ApiIncludeDir})
64 ExportHeader(APIHeaders BamAlgorithms.h ${ApiIncludeDir})
65 ExportHeader(APIHeaders BamAlignment.h ${ApiIncludeDir})
66 ExportHeader(APIHeaders BamAux.h ${ApiIncludeDir})
67 ExportHeader(APIHeaders BamConstants.h ${ApiIncludeDir})
68 ExportHeader(APIHeaders BamIndex.h ${ApiIncludeDir})
69 ExportHeader(APIHeaders BamMultiReader.h ${ApiIncludeDir})
70 ExportHeader(APIHeaders BamReader.h ${ApiIncludeDir})
71 ExportHeader(APIHeaders BamWriter.h ${ApiIncludeDir})
72 ExportHeader(APIHeaders IBamIODevice.h ${ApiIncludeDir})
73 ExportHeader(APIHeaders SamConstants.h ${ApiIncludeDir})
74 ExportHeader(APIHeaders SamHeader.h ${ApiIncludeDir})
75 ExportHeader(APIHeaders SamProgram.h ${ApiIncludeDir})
76 ExportHeader(APIHeaders SamProgramChain.h ${ApiIncludeDir})
77 ExportHeader(APIHeaders SamReadGroup.h ${ApiIncludeDir})
78 ExportHeader(APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir})
79 ExportHeader(APIHeaders SamSequence.h ${ApiIncludeDir})
80 ExportHeader(APIHeaders SamSequenceDictionary.h ${ApiIncludeDir})
82 set( AlgorithmsIncludeDir "api/algorithms" )
83 ExportHeader( AlgorithmsHeaders algorithms/Sort.h ${AlgorithmsIncludeDir} )