1 # ==========================
2 # BamTools CMakeLists.txt
3 # (c) 2010 Derek Barnett
6 # ==========================
9 include_directories( ${BamTools_SOURCE_DIR}/src )
11 # add compiler definitions
12 add_definitions( -DBAMTOOLS_API_LIBRARY ) # (for proper exporting of library symbols)
13 add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
15 # list of all BamTools API source (.cpp) files
16 set( BamToolsAPISources
25 SamReadGroupDictionary.cpp
27 SamSequenceDictionary.cpp
28 internal/BamHeader_p.cpp
29 internal/BamIndexFactory_p.cpp
30 internal/BamMultiReader_p.cpp
31 internal/BamRandomAccessController_p.cpp
32 internal/BamReader_p.cpp
33 internal/BamStandardIndex_p.cpp
34 internal/BamToolsIndex_p.cpp
35 internal/BamWriter_p.cpp
36 internal/BgzfStream_p.cpp
37 internal/SamFormatParser_p.cpp
38 internal/SamFormatPrinter_p.cpp
39 internal/SamHeaderValidator_p.cpp
42 # create main BamTools API shared library
43 add_library( BamTools SHARED ${BamToolsAPISources} )
44 set_target_properties( BamTools PROPERTIES SOVERSION "1.0.2" )
45 set_target_properties( BamTools PROPERTIES OUTPUT_NAME "bamtools" )
47 # create main BamTools API static library
48 add_library( BamTools-static STATIC ${BamToolsAPISources} )
49 set_target_properties( BamTools-static PROPERTIES OUTPUT_NAME "bamtools" )
50 set_target_properties( BamTools-static PROPERTIES PREFIX "lib" )
52 # link libraries with zlib automatically
53 target_link_libraries( BamTools z )
54 target_link_libraries( BamTools-static z )
56 # set library install destinations
57 install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
58 install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
61 include(../ExportHeader.cmake)
62 set(ApiIncludeDir "api")
63 ExportHeader(APIHeaders api_global.h ${ApiIncludeDir})
64 ExportHeader(APIHeaders BamAlignment.h ${ApiIncludeDir})
65 ExportHeader(APIHeaders BamAux.h ${ApiIncludeDir})
66 ExportHeader(APIHeaders BamConstants.h ${ApiIncludeDir})
67 ExportHeader(APIHeaders BamIndex.h ${ApiIncludeDir})
68 ExportHeader(APIHeaders BamMultiReader.h ${ApiIncludeDir})
69 ExportHeader(APIHeaders BamReader.h ${ApiIncludeDir})
70 ExportHeader(APIHeaders BamWriter.h ${ApiIncludeDir})
71 ExportHeader(APIHeaders SamConstants.h ${ApiIncludeDir})
72 ExportHeader(APIHeaders SamHeader.h ${ApiIncludeDir})
73 ExportHeader(APIHeaders SamProgram.h ${ApiIncludeDir})
74 ExportHeader(APIHeaders SamProgramChain.h ${ApiIncludeDir})
75 ExportHeader(APIHeaders SamReadGroup.h ${ApiIncludeDir})
76 ExportHeader(APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir})
77 ExportHeader(APIHeaders SamSequence.h ${ApiIncludeDir})
78 ExportHeader(APIHeaders SamSequenceDictionary.h ${ApiIncludeDir})