sphinx/index.rst

   1 .. _WELCOme:
   2
   3 *********************************************
   4  The Ultimate Neuroscience Software Platform
   5 *********************************************
   6
   7 NeuroDebian provides a large collection of popular neuroscience research
   8 software for the Debian_ operating system as well as Ubuntu_ and other
   9 derivatives. Popular packages include FSL, Freesurfer, AFNI, PyMVPA and
  10 :ref:`many others <pkg_tocs>`. While we do strive to maintain a high level of
  11 quality, we make no guarantee that a given package works as expected, so use
  12 them at your own risk. If you do encounter problems or you just like to say
  13 thanks, simply :ref:`send us an email <chap_contacts>`.
  14
  15 Learn more about NeuroDebian, the goals of this project, and help us |spread|!
  16
  17   Halchenko, Y. O. & Hanke, M. (2012). `Open is not enough. Let’s take the
  18   next step: An integrated, community-driven computing platform for neuroscience
  19   <http://www.frontiersin.org/Neuroinformatics/10.3389/fninf.2012.00022/full>`_.
  20   *Frontiers in Neuroinformatics*, 6:22.
  21
  22 .. raw:: html
  23
  24   <div class="linkmore"><a href="publications.html" name="publications">more publications</a></div>
  25   <div class="clearer"></div>
  26   <!-- for dynamic quote update via javascript -->
  27   <hr />
  28   <div id="randomquote" title="Feedback from the community">
  29
  30 .. quotes::
  31    :random: 1
  32
  33 .. raw:: html
  34
  35   </div><!-- randomquote -->
  36   <div class="linkmore"><a href="testimonials.html">more testimonials</a></div>
  37
  38 .. _Ubuntu: http://www.ubuntu.com
  39
  40 .. _repository_howto:
  41 .. _chap_installation:
  42
  43 Get NeuroDebian
  44 ===============
  45
  46 .. include:: reposetup.rst
  47
  48 .. _news:
  49
  50 News
  51 ====
  52
  53 .. raw:: html
  54
  55  <script src="_static/jquery.livetwitter.min.js"></script>
  56  <div id="identica_widget"></div>
  57  <script type="text/javascript">
  58  $("#identica_widget").liveTwitter('neurodebian',
  59                                    {service: 'identi.ca',
  60                                     mode: 'user_timeline',
  61                                     limit: 10,
  62                                     rate: 300000});
  63  </script>
  64  <div class="nojavascriptinstructions">
  65  The news widget requires javascript
  66  </div>
  67
  68 .. _identi.ca: http://identi.ca/neurodebian
  69 .. _twitter: http://twitter.com/NeuroDebian
  70
  71
  72 .. raw:: html
  73
  74   <hr />
  75   <div id="sitemap">
  76   <!-- Some anchors to orient users of old-website urls -->
  77   <a name="acknowledgements"/>
  78   <a name="contacts"/>
  79   <a name="the-team"/>
  80   <a name="debian-installation"/>
  81   <a name="virtual-machine"/>
  82   <a name="ways-to-use-neurodebian">&nbsp;</a>
  83
  84 * **About**
  85 * :ref:`The Team <chap_team>`
  86 * :ref:`FAQ <faq>`
  87 * :ref:`Blog <blog>`
  88 * :ref:`chap_popularity`
  89 * :ref:`chap_publications`
  90 * :ref:`chap_acknowledgements`
  91 * :ref:`testimonials`
  92 * :ref:`coffeeart`
  93
  94 .. start a new list
  95
  96 * **Services**
  97 * :ref:`Software <pkg_tocs>`
  98 * :ref:`Data <toc_pkgs_for_release_data>`
  99 * :ref:`Appliance <chap_vm>`
 100
 101 .. start a new list
 102
 103 * **Community**
 104 * :ref:`Contacts <chap_contacts>`
 105 * :ref:`Mailing lists <chap_mailinglists>`
 106 * `OpenHatch <https://openhatch.org/+projects/NeuroDebian>`_
 107 * `Identi.ca <http://identi.ca/neurodebian>`_
 108 * `Twitter <http://twitter.com/NeuroDebian>`_
 109 * `Google+ <https://plus.google.com/104292290917252528951>`_
 110 * `YouTube <http://www.youtube.com/neurodebian>`_
 111 * `GitHub <https://github.com/neurodebian>`_
 112
 113 .. start a new list
 114
 115 * **Related**
 116 * `Debian <http://www.debian.org>`_
 117 * `Debian Med <http://www.debian.org/devel/debian-med>`_
 118 * `INCF <http://software.incf.org/software/neurodebian>`_
 119 * `NITRC <http://www.nitrc.org/projects/neurodebian>`_
 120
 121 .. raw:: html
 122
 123   </div><div class="clearer"></div>
 124   <hr />
 125
 126
 127 .. toctree::
 128    :hidden:
 129
 130    blog/index
 131    faq
 132    thanks
 133    popularity
 134    about
 135    pkgs
 136    spread
 137    vm
 138    publications
 139    coffeeart
 140    photoalbum
 141    projects
 142    testimonials
 143    testimonials-topics
 144    vm_welcome
 145    derivatives
 146
 147 .. are these supposed to be visible?
 148 .. toctree::
 149    :hidden:
 150
 151    machines
 152    todo
 153
 154 .. toctree::
 155    :hidden:
 156    :glob:
 157
 158    pkgs/*
 159    pkglists/*
 160
 161 .. probably should be purged altogether
 162 .. toctree::
 163    :hidden:
 164
 165    livecd
 166    quotes-nihr01
 167    quotes-nitrc
 168
 169 .. include:: link_names.txt
 170 .. include:: substitutions.txt
 171
 172 .. raw:: html
 173
 174   <script type="text/javascript">
 175   $(document).ready(function($) {
 176     //setInterval(function(){
 177       $.get('testimonials.html', function(data) {
 178           var quotes = $("blockquote", data);
 179           var idx = Math.floor(quotes.length * Math.random());
 180           $('#randomquote').html(quotes[idx]);
 181       }); // update callback
 182     //}, 60000); // set interval
 183   }); // doc ready
 184   //$("h1").html("NeuroDebian <span style=\"font-size:14px\">&mdash; the ultimate neuroscience software platform</span>")
 185
 186   function foldbuttontoggle(foldname) {
 187       var foldid = '#' + foldname;
 188       var buttonid = foldid + 'button';
 189       $(buttonid).on('click', function() {
 190         $('#' + foldname).slideToggle();
 191         if ($(buttonid).html() == "↓↓↓") {
 192           $(buttonid).html("&uarr;&uarr;&uarr;");
 193         }
 194         else {
 195           $(buttonid).html("&darr;&darr;&darr;");
 196         }
 197       });
 198       $(foldid).slideUp();
 199       $(buttonid).html("&darr;&darr;&darr;");
 200   };
 201
 202   </script>