1 .. -*- mode: rst; fill-column: 78 -*-
2 .. ex: set sts=4 ts=4 sw=4 et tw=79:
6 *************************
7 NeuroDebian "Derivatives"
8 *************************
10 .. replace with icons eventually
12 `Live CD/USB Media`_ | `Virtual Appliances`_ | `Cloud Solutions`_
14 NeuroDebian_ is not a *Linux distribution* in a traditional sense because we
15 are working within Debian_ project thus not providing our custom installer
16 etc. But we are a Linux-distribution providing a repository of up-to-date
17 builds and maintaining a :ref:`chap_vm` deployment of Debian. Because of the
18 openness and modularity of Debian other enthusiasts develop customized
19 derivative solutions to address their particular needs.
21 This page presents some of such *derivative* projects which are tuned for
22 particular domains of application in neuroscience and rely on NeuroDebian_ as
23 the origin of necessary tools.
27 These projects are not maintained by NeuroDebian_ team. Please direct all
28 you support inquiries to respective authors/maintainers.
33 USB Stick for Computational Neuroscience by Cengiz Günay
34 --------------------------------------------------------
36 +---------------------------+-------------------------------------------------------+
37 |**Author** | Cengiz Günay <cengique AT users.sf.net> |
38 +---------------------------+-------------------------------------------------------+
40 +---------------------------+-------------------------------------------------------+
41 |**Purpose** | Computational neuroscience tools for course-work |
42 +---------------------------+-------------------------------------------------------+
43 |**Features** | - Persistent Storage |
44 | | - Based on Ubuntu_ 11.04 |
45 +---------------------------+-------------------------------------------------------+
46 |**Pre-installed Software** | NeuroDebian |
47 | | XPPAUT_ 6.11b, python-brian_ |
49 | | Genesis_ 2.3, Neuron_ 7.2, XPPAUT_ 6.10 |
50 +---------------------------+-------------------------------------------------------+
52 +---------------------------+-------------------------------------------------------+
53 |**References** | TBA |
54 +---------------------------+-------------------------------------------------------+
60 +---------------------------+-------------------------------------------------------+
61 |**Author** | Kiyotaka Nemoto <kiyotaka@nemotos.net> |
62 +---------------------------+-------------------------------------------------------+
63 |**Homepage** | http://www.nemotos.net/?page_id=504 |
64 +---------------------------+-------------------------------------------------------+
65 |**Purpose** | Neuroimaging tools for course-work |
66 +---------------------------+-------------------------------------------------------+
67 |**Features** | - Datasets and tutorials from C.Rorden (mricron_) |
68 | | - Both 32- and 64-bit images |
69 | | - Based on Ubuntu_ 10.04 LTS |
70 +---------------------------+-------------------------------------------------------+
71 |**Pre-installed Software** | NeuroDebian |
72 | | AFNI_, AMIDE, Caret_, FSL_, LIPSIA_, mricron_, etc. |
74 | | 3DSlicer, Ginkgo CADx, MINC, MRIConvert, Virtual MRI |
75 +---------------------------+-------------------------------------------------------+
76 |**Download** | ftp://ftp.nemotos.net/ [~2GB] |
77 +---------------------------+-------------------------------------------------------+
78 |**References** | http://www.biomedcentral.com/1471-2342/11/3 |
79 +---------------------------+-------------------------------------------------------+
88 +---------------------------+-------------------------------------------------------+
89 |**Author** | Satrajit Ghosh <satra@mit.edu> |
90 +---------------------------+-------------------------------------------------------+
91 |**Homepage** | http://datasharing.incf.org/ni/Install_XNAT |
92 +---------------------------+-------------------------------------------------------+
93 |**Purpose** | XNAT_ deployment |
94 +---------------------------+-------------------------------------------------------+
95 |**Features** | - XNAT_ 1.5 |
97 | | - Based on NeuroDebian VM appliance |
98 +---------------------------+-------------------------------------------------------+
99 |**Pre-installed Software** | Custom: |
101 +---------------------------+-------------------------------------------------------+
102 |**Download** | `XNAT 1.5.0 NeuroDebian VM <xnat_vm_image>`_ |
103 +---------------------------+-------------------------------------------------------+
105 .. _xnat_vm_image: http://neuro.debian.net/_files/contrib/NeuroDebian_6.0.2+XNAT1.5.0-1_amd64.ova
108 JIST Development Virtual Machine
109 --------------------------------
111 http://www.nitrc.org/projects/jist
120 http://gow.epsrc.ac.uk/ViewGrant.aspx?GrantRef=EP/I016856/1
127 .. include:: link_names.txt