sphinx/derivatives.rst

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   6 *************************
   7 NeuroDebian "Derivatives"
   8 *************************
   9
  10 .. replace with icons eventually
  11
  12 `Live CD/USB Media`_ | `Virtual Appliances`_ | `Cloud Solutions`_
  13
  14 NeuroDebian_ is not a *Linux distribution* in a traditional sense because we
  15 are working within Debian_ project thus not providing our custom installer
  16 etc.  But we are a Linux-distribution providing a repository of up-to-date
  17 builds and maintaining a :ref:`chap_vm` deployment of Debian.  Because of the
  18 openness and modularity of Debian other enthusiasts develop customized
  19 derivative solutions to address their particular needs.
  20
  21 This page presents some of such *derivative* projects which are tuned for
  22 particular domains of application in neuroscience and rely on NeuroDebian_ as
  23 the origin of necessary tools.
  24
  25 .. note::
  26
  27    These projects are not maintained by NeuroDebian_ team.  Please direct all
  28    you support inquiries to respective authors/maintainers.
  29
  30 Live CD/USB Media
  31 =================
  32
  33 USB Stick for Computational Neuroscience by Cengiz Günay
  34 --------------------------------------------------------
  35
  36 +---------------------------+-------------------------------------------------------+
  37 |**Author**                 | Cengiz Günay <cengique AT users.sf.net>               |
  38 +---------------------------+-------------------------------------------------------+
  39 |**Homepage**               | TBA                                                   |
  40 +---------------------------+-------------------------------------------------------+
  41 |**Purpose**                | Computational neuroscience tools for course-work      |
  42 +---------------------------+-------------------------------------------------------+
  43 |**Features**               | - Persistent Storage                                  |
  44 |                           | - Based on Ubuntu_ 11.04                              |
  45 +---------------------------+-------------------------------------------------------+
  46 |**Pre-installed Software** | NeuroDebian                                           |
  47 |                           |  XPPAUT_ 6.11b, python-brian_                               |
  48 |                           | Custom:                                               |
  49 |                           |  Genesis_ 2.3, Neuron_ 7.2, XPPAUT_ 6.10              |
  50 +---------------------------+-------------------------------------------------------+
  51 |**Download**               | TBA                                                   |
  52 +---------------------------+-------------------------------------------------------+
  53 |**References**             | TBA                                                   |
  54 +---------------------------+-------------------------------------------------------+
  55
  56
  57 Lin4Neuro
  58 ---------
  59
  60 +---------------------------+-------------------------------------------------------+
  61 |**Author**                 | Kiyotaka Nemoto <kiyotaka@nemotos.net>                |
  62 +---------------------------+-------------------------------------------------------+
  63 |**Homepage**               | http://www.nemotos.net/?page_id=504                   |
  64 +---------------------------+-------------------------------------------------------+
  65 |**Purpose**                | Neuroimaging tools for course-work                    |
  66 +---------------------------+-------------------------------------------------------+
  67 |**Features**               | - Datasets and tutorials from C.Rorden (mricron_)     |
  68 |                           | - Both 32- and 64-bit images                          |
  69 |                           | - Based on Ubuntu_ 10.04 LTS                          |
  70 +---------------------------+-------------------------------------------------------+
  71 |**Pre-installed Software** | NeuroDebian                                           |
  72 |                           |  AFNI_, AMIDE, Caret_, FSL_, LIPSIA_, mricron_, etc.  |
  73 |                           | Custom:                                               |
  74 |                           |  3DSlicer, Ginkgo CADx, MINC, MRIConvert, Virtual MRI |
  75 +---------------------------+-------------------------------------------------------+
  76 |**Download**               | ftp://ftp.nemotos.net/ [~2GB]                         |
  77 +---------------------------+-------------------------------------------------------+
  78 |**References**             | http://www.biomedcentral.com/1471-2342/11/3           |
  79 +---------------------------+-------------------------------------------------------+
  80
  81
  82 Virtual Appliances
  83 ==================
  84
  85 XNAT
  86 ----
  87
  88 +---------------------------+-------------------------------------------------------+
  89 |**Author**                 | Satrajit Ghosh <satra@mit.edu>                        |
  90 +---------------------------+-------------------------------------------------------+
  91 |**Homepage**               | http://datasharing.incf.org/ni/Install_XNAT           |
  92 +---------------------------+-------------------------------------------------------+
  93 |**Purpose**                | XNAT_ deployment                                      |
  94 +---------------------------+-------------------------------------------------------+
  95 |**Features**               | - XNAT_ 1.5                                            |
  96 |                           | - 64-bit only                                         |
  97 |                           | - Based on NeuroDebian VM appliance                   |
  98 +---------------------------+-------------------------------------------------------+
  99 |**Pre-installed Software** | Custom:                                               |
 100 |                           |  XNAT_                                                |
 101 +---------------------------+-------------------------------------------------------+
 102 |**Download**               | `XNAT 1.5.0 NeuroDebian VM <xnat_vm_image>`_          |
 103 +---------------------------+-------------------------------------------------------+
 104
 105 .. _xnat_vm_image: http://neuro.debian.net/_files/contrib/NeuroDebian_6.0.2+XNAT1.5.0-1_amd64.ova
 106
 107
 108 JIST Development Virtual Machine
 109 --------------------------------
 110
 111 http://www.nitrc.org/projects/jist
 112
 113
 114 Cloud Solutions
 115 ===============
 116
 117 NeuroCloud
 118 ----------
 119
 120 http://gow.epsrc.ac.uk/ViewGrant.aspx?GrantRef=EP/I016856/1
 121
 122 ..  * INCF Cloud App?
 123
 124 ..  * NITRC?
 125
 126
 127 .. include:: link_names.txt