1 #ifndef SETCURRENTCOMMAND_H
2 #define SETCURRENTCOMMAND_H
8 * Created by westcott on 3/16/11.
9 * Copyright 2011 Schloss Lab. All rights reserved.
14 #include "command.hpp"
16 class SetCurrentCommand : public Command {
19 SetCurrentCommand(string);
21 ~SetCurrentCommand() {}
23 vector<string> setParameters();
24 string getCommandName() { return "set.current"; }
25 string getCommandCategory() { return "General"; }
27 string getHelpString();
28 string getOutputPattern(string){ return ""; }
29 string getCitation() { return "http://www.mothur.org/wiki/Set.current"; }
30 string getDescription() { return "set current files for mothur"; }
33 void help() { m->mothurOut(getHelpString()); }
37 vector<string> outputNames;
43 string accnosfile, phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, designfile, taxonomyfile, biomfile, countfile, summaryfile;
44 string orderfile, treefile, sharedfile, ordergroupfile, relabundfile, fastafile, qualfile, sfffile, oligosfile, processors, flowfile;