1 #ifndef SENSSPECCOMMAND_H
2 #define SENSSPECCOMMAND_H
9 * Created by Pat Schloss on 7/6/10.
10 * Copyright 2010 Schloss Lab. All rights reserved.
15 #include "command.hpp"
17 class SensSpecCommand : public Command {
20 SensSpecCommand(string);
23 vector<string> getRequiredParameters();
24 vector<string> getValidParameters();
25 vector<string> getRequiredFiles();
26 map<string, vector<string> > getOutputFiles() { return outputTypes; }
34 void outputStatistics(string, string);
36 string listFile, distFile, nameFile, sensSpecFileName;
39 vector<string> outputNames;
40 map<string, vector<string> > outputTypes;
42 long int truePositives, falsePositives, trueNegatives, falseNegatives;