sandbox/survey.rst

   1
   2 Scientific software usage in neuroscience research
   3 ==================================================
   4
   5 This survey should take about five minutes. Immediately after submission you
   6 will be presented with some statistics on previous responses. Please try to
   7 answer as many questions as you can, but don't worry if you cannot answer all
   8 of them.
   9
  10 .. raw:: html
  11
  12    <script type="text/javascript" src="_static/jquery.js"></script>
  13    <script type="text/javascript" src="_static/jquery.form.js"></script>
  14
  15    <script type="text/javascript">
  16    // prepare the form when the DOM is ready
  17    $(document).ready(function() {
  18        var options = {
  19            //beforeSubmit:  showRequest,  // pre-submit callback
  20            success:       showResponse,  // post-submit callback
  21            // other available options:
  22            url: "/cgi-bin/surveycollector.cgi",
  23            type: "post",
  24            dataType:  "json",
  25            clearForm: false,
  26            resetForm: false
  27        };
  28
  29        $('#nss_survey').submit(function() {
  30            $(this).ajaxSubmit(options);
  31
  32            // !!! Important !!!
  33            // always return false to prevent standard browser submit and page navigation
  34            return false;
  35        });
  36    });
  37
  38    // pre-submit callback
  39    function showRequest(formData, jqForm, options) {
  40        var queryString = $.param(formData);
  41        alert('About to submit: \n\n' + queryString);
  42        return true;
  43    }
  44
  45    function showResponse(data, statusText, xhr, $form)  {
  46        // reset form if server reports success
  47        if (data.success == true) {
  48            $('#nss_survey').resetForm();
  49            $('#server_response').html("All good");
  50        } else {
  51            $('#server_response').html("");
  52            alert(data.message);
  53        }
  54    }
  55    </script>
  56    <form id="nss_survey" action="/cgi-bin/surveycollector.cgi" method="post">
  57
  58
  59 Personal background
  60 -------------------
  61
  62 .. raw:: html
  63
  64    <table>
  65    <tr class="oddrow">
  66    <td>
  67
  68 Which country are you working in?
  69
  70 .. raw:: html
  71
  72    </td><td class="response">
  73
  74 .. raw:: html
  75    :file: select_country.inc
  76
  77 .. raw:: html
  78
  79    </td></tr><tr><td>
  80
  81 Where are you working?
  82
  83 .. raw:: html
  84
  85    </td><td class="response">
  86    <select name="bg_employer" size="1">
  87    <option value="none" selected="selected" label="Select an option">Select an option</option>
  88    <option value="edu_priv" label="Higher education (privately funded)">Higher education (privately funded)</option>
  89    <option value="edu_pub" label="Higher education (publicly funded)">Higher education (publicly funded)</option>
  90    <option value="research_priv" label="Research institution (privately funded)">Research institution (privately funded)</option>
  91    <option value="research_pub" label="Research institution (publicly funded)">Research institution (publicly funded)</option>
  92    <option value="company" label="Company">Company</option>
  93    </select>
  94    </td></tr><tr class="oddrow"><td>
  95
  96 What is your position?
  97
  98 .. raw:: html
  99
 100    </td><td class="response">
 101    <select name="bg_position" size="1">
 102    <option value="none" selected="selected" label="Select an option">Select an option</option>
 103    <option value="undergrad" label="Undergraduate student">Undergraduate student</option>
 104    <option value="graduate" label="PhD student">PhD student</option>
 105    <option value="postdoc" label="Postdoc">Postdoc</option>
 106    <option value="professor" label="Professor/Supervisor">Professor/Supervisor</option>
 107    <option value="ra" label="Research assistant">Research assistant</option>
 108    <option value="researcher" label="Other researcher">Other researcher</option>
 109    <option value="sysadmin" label="System administrator">System administrator</option>
 110    </select>
 111    </td></tr><tr><td>
 112
 113 What type of data are you working with? Please check all items that apply.
 114
 115 .. raw:: html
 116
 117    </td><td class="response">
 118    <table><tr><td>
 119    <input type="checkbox" name="bg_datamod" value="behav" />Behavioral<br />
 120    <input type="checkbox" name="bg_datamod" value="mri" />MRI/fMRI/DTI<br />
 121    <input type="checkbox" name="bg_datamod" value="meeg" />EEG/MEG<br />
 122    </td><td>
 123    <input type="checkbox" name="bg_datamod" value="pet" />PET/SPECT<br />
 124    <input type="checkbox" name="bg_datamod" value="ephys" />Electrophysiology<br />
 125    <input type="checkbox" name="bg_datamod" value="spectro" />Microspectroscopy<br />
 126    <input type="checkbox" name="bg_datamod" value="other" />
 127    <input name="bg_datamod_other" type="text" size="20" maxlength="40">
 128    </td></tr></table>
 129    </td></tr><tr class="oddrow"><td>
 130
 131 Are you developing software that is intended to be used by other researchers?
 132
 133 .. raw:: html
 134
 135    </td><td class="response">
 136    <span><input type="radio" name="bg_developer" value="yes" />Yes</span>
 137    <span><input type="radio" name="bg_developer" value="no" checked="checked" />No</span>
 138    </td>
 139    </tr>
 140    </table>
 141
 142 Personal scientific software environment
 143 ----------------------------------------
 144
 145 Here are a few questions about your personal scientific software environment
 146 for research activities like data acquisition, computational modeling, and data
 147 analysis. You might be running this on your laptop, desktop, personal
 148 workstation or any other machine where **you decide** what software you are
 149 using, and you typically also have permission to **install it yourself**.  If
 150 you are operating different environments, please describe the one that you find
 151 most productive for your research purposes. If you don't have a machine that
 152 you administer yourself, instead, please indicate what kind of scientific
 153 software environment you would like to be doing your research in.
 154
 155 .. raw:: html
 156
 157    <table>
 158    <tr class="oddrow">
 159    <td>
 160
 161 What fraction of your research activity time do you spend in this software
 162 environment as opposed to any other environment that you migh have access to?
 163
 164 .. raw:: html
 165
 166    </td><td class="response">
 167    <select name="pers_time" size="1">
 168    <option value="none" selected="selected" label="Select an option">Select an option</option>
 169    <option value="notime" label="None/I don't have this environment">None/I don't have this environment</option>
 170    <option value="little" label="Less then half of the time">Less then half of the time</option>
 171    <option value="most" label="More than half of the time">More than half of the time</option>
 172    <option value="always" label="All of the time">All of the time</option>
 173    </select>
 174    </td></tr><tr><td>
 175
 176 What type of hardware are you using?
 177
 178 .. raw:: html
 179
 180    </td><td class="response">
 181    <select name="pers_hardware" size="1">
 182    <option value="none" selected="selected" label="Select an option">Select an option</option>
 183    <option value="laptop" label="Laptop/Portable device">Laptop/Portable device</option>
 184    <option value="desktop" label="Commodity desktop">Commodity desktop</option>
 185    <option value="workstation" label="High-performance workstation">High-performance workstation</option>
 186    <option value="cluster" label="Compute cluster">Compute cluster</option>
 187    <option value="grid" label="Grid/Cloud-computing facility">Grid/Cloud-computing facility</option>
 188    </select>
 189    </td></tr><tr class="oddrow"><td>
 190
 191 What operating system is this environment running on?
 192
 193 .. raw:: html
 194
 195    </td><td class="response">
 196    <select name="pers_os" size="1">
 197
 198 .. raw:: html
 199    :file: select_os_options.inc
 200
 201 .. raw:: html
 202
 203    </select>
 204    </td></tr><tr><td>
 205
 206 How much time do you spend each month on maintaining this environment?  This
 207 includes the time spent on operating system (security) upgrades, as well as
 208 installing and updating scientific software.
 209
 210 .. raw:: html
 211
 212    </td><td class="response">
 213    <input name="pers_maint_time" type="text" size="3" maxlength="3"> hours per month
 214    </td>
 215    </tr>
 216    </table>
 217
 218 ---------------------------------------------------------------
 219
 220 Please indicate how much you agree to the following statements.
 221
 222 .. raw:: html
 223
 224    <table>
 225    <tr><th colspan="2" style="text-align:left;font-weight:normal">
 226
 227 *I prefer this particular scientific software environment because ...*
 228
 229 .. raw:: html
 230
 231    </th></tr><tr class="oddrow">
 232    <td class="task">
 233
 234 ... the developers of an important research software recommend it
 235
 236 .. raw:: html
 237
 238    </td><td class="response">
 239    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r1" value="3" /></div>
 240    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r1" value="2" /></div>
 241    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r1" value="1" /></div>
 242    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r1" value="0" /></div>
 243    </td></tr><tr><td class="task">
 244
 245
 246 ... of the variety of available research software for this environment
 247
 248 .. raw:: html
 249
 250    </td><td class="response">
 251    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r2" value="3" /></div>
 252    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r2" value="2" /></div>
 253    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r2" value="1" /></div>
 254    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r2" value="0" /></div>
 255    </td></tr><tr class="oddrow"><td class="task">
 256
 257
 258 ... of the availibility of commercial support
 259
 260 .. raw:: html
 261
 262    </td><td class="response">
 263    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r3" value="3" /></div>
 264    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r3" value="2" /></div>
 265    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r3" value="1" /></div>
 266    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r3" value="0" /></div>
 267    </td></tr><tr><td class="task">
 268
 269
 270 ... many of my colleagues use something similar
 271
 272 .. raw:: html
 273
 274    </td><td class="response">
 275    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r4" value="3" /></div>
 276    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r4" value="2" /></div>
 277    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r4" value="1" /></div>
 278    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r4" value="0" /></div>
 279    </td></tr><tr class="oddrow"><td class="task">
 280
 281
 282 ... it is popular and I can get solutions for problems from web forums and mailing lists
 283
 284 .. raw:: html
 285
 286    </td><td class="response">
 287    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r5" value="3" /></div>
 288    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r5" value="2" /></div>
 289    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r5" value="1" /></div>
 290    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r5" value="0" /></div>
 291    </td></tr><tr><td class="task">
 292
 293
 294 ... I rely on a particular application that only runs in this environment
 295
 296 .. raw:: html
 297
 298    </td><td class="response">
 299    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r6" value="3" /></div>
 300    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r6" value="2" /></div>
 301    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r6" value="1" /></div>
 302    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r6" value="0" /></div>
 303    </td></tr><tr class="oddrow"><td class="task">
 304
 305
 306 ... it has adequate support for all required hardware
 307
 308 .. raw:: html
 309
 310    </td><td class="response">
 311    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r7" value="3" /></div>
 312    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r7" value="2" /></div>
 313    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r7" value="1" /></div>
 314    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r7" value="0" /></div>
 315    </td></tr><tr><td class="task">
 316
 317
 318 ... I have the necessary technical skills to maintain this environment myself
 319
 320 .. raw:: html
 321
 322    </td><td class="response">
 323    <div class="rating">Definitely agree<br /><input type="radio" name="pers_r8" value="3" /></div>
 324    <div class="rating">Mostly agree<br /><input type="radio" name="pers_r8" value="2" /></div>
 325    <div class="rating">Mostly disagree<br /><input type="radio" name="pers_r8" value="1" /></div>
 326    <div class="rating">Definitely disagree<br /><input type="radio" name="pers_r8" value="0" /></div>
 327    </td>
 328    </tr>
 329    </table>
 330
 331
 332 Managed scientific software environment
 333 ---------------------------------------
 334
 335 The following questions are about a managed environment of scientific software
 336 that is provided to you to carry out computing and data analysis. Such an
 337 environment is typically managed by **dedicated IT staff**, and **you don't
 338 have permissions to install arbitrary software**. This environment may be
 339 shared by many researchers in a lab, a whole research institution, or even be
 340 publicly accessible. If you have access to multiple environments of this kind,
 341 please describe the one that offers most support for your particular research
 342 purposes.
 343
 344
 345 .. raw:: html
 346
 347    <table class="questionaire">
 348    <tr class="oddrow">
 349    <td>
 350
 351 What fraction of time do you spend in this environment during your research
 352 activities?
 353
 354 .. raw:: html
 355
 356    </td><td class="response">
 357    <select name="man_time" size="1">
 358    <option value="none" selected="selected" label="Select an option">Select an option</option>
 359    <option value="notime" label="None/I don't use this">None/I don't use this</option>
 360    <option value="little" label="Less then half of the time">Less then half of the time</option>
 361    <option value="most" label="More than half of the time">More than half of the time</option>
 362    <option value="always" label="All of the time">All of the time</option>
 363    </select>
 364    </td></tr><tr><td>
 365
 366 What type of hardware is this software environment running on?
 367
 368 .. raw:: html
 369
 370    </td><td class="response">
 371    <select name="man_hardware" size="1">
 372    <option value="none" selected="selected" label="Select an option">Select an option</option>
 373    <option value="laptop" label="Laptop/Portable device">Laptop/Portable device</option>
 374    <option value="desktop" label="Commodity desktop">Commodity desktop</option>
 375    <option value="workstation" label="High-performance workstation">High-performance workstation</option>
 376    <option value="cluster" label="Compute cluster">Compute cluster</option>
 377    <option value="grid" label="Grid/Cloud-computing facility">Grid/Cloud-computing facility</option>
 378    </select>
 379    </td></tr><tr class="oddrow"><td>
 380
 381
 382 What operating system is this environment running on?
 383
 384 .. raw:: html
 385
 386    </td><td class="response">
 387    <select name="man_os" size="1">
 388
 389 .. raw:: html
 390    :file: select_os_options.inc
 391
 392 .. raw:: html
 393
 394    </select>
 395    </td>
 396    </tr>
 397    </table>
 398
 399 ---------------------------------------------------------------
 400
 401 How much do you agree to the following statements?
 402
 403 .. raw:: html
 404
 405    <table>
 406    <tr class="oddrow">
 407    <td class="task">
 408
 409 This environment provides me with the best available tools for my research
 410
 411 .. raw:: html
 412
 413    </td><td class="response">
 414    <div class="rating">Definitely agree<br /><input type="radio" name="man_r1" value="3" /></div>
 415    <div class="rating">Mostly agree<br /><input type="radio" name="man_r1" value="2" /></div>
 416    <div class="rating">Mostly disagree<br /><input type="radio" name="man_r1" value="1" /></div>
 417    <div class="rating">Definitely disagree<br /><input type="radio" name="man_r1" value="0" /></div>
 418    </td></tr><tr><td class="task">
 419
 420 The support staff solves all my technical problems and addresses my demands in
 421 a timely fashion
 422
 423 .. raw:: html
 424
 425    </td><td class="response">
 426    <div class="rating">Definitely agree<br /><input type="radio" name="man_r2" value="3" /></div>
 427    <div class="rating">Mostly agree<br /><input type="radio" name="man_r2" value="2" /></div>
 428    <div class="rating">Mostly disagree<br /><input type="radio" name="man_r2" value="1" /></div>
 429    <div class="rating">Definitely disagree<br /><input type="radio" name="man_r2" value="0" /></div>
 430    </td></tr><tr class="oddrow"><td class="task">
 431
 432 There are always enough licenses for essential commerical software tools
 433
 434 .. raw:: html
 435
 436    </td><td class="response">
 437    <div class="rating">Definitely agree<br /><input type="radio" name="man_r3" value="3" /></div>
 438    <div class="rating">Mostly agree<br /><input type="radio" name="man_r3" value="2" /></div>
 439    <div class="rating">Mostly disagree<br /><input type="radio" name="man_r3" value="1" /></div>
 440    <div class="rating">Definitely disagree<br /><input type="radio" name="man_r3" value="0" /></div>
 441    </td></tr><tr><td class="task">
 442
 443 I need to deploy additional software to be able to perform my research in this environment
 444
 445 .. raw:: html
 446
 447    </td><td class="response">
 448    <div class="rating">Definitely agree<br /><input type="radio" name="man_r4" value="3" /></div>
 449    <div class="rating">Mostly agree<br /><input type="radio" name="man_r4" value="2" /></div>
 450    <div class="rating">Mostly disagree<br /><input type="radio" name="man_r4" value="1" /></div>
 451    <div class="rating">Definitely disagree<br /><input type="radio" name="man_r4" value="0" /></div>
 452    </td></tr><tr class="oddrow"><td class="task">
 453
 454
 455 Using this managed environment is more cost effective than operating a suitable
 456 environment myself
 457
 458 .. raw:: html
 459
 460    </td><td class="response">
 461    <div class="rating">Definitely agree<br /><input type="radio" name="man_r5" value="3" /></div>
 462    <div class="rating">Mostly agree<br /><input type="radio" name="man_r5" value="2" /></div>
 463    <div class="rating">Mostly disagree<br /><input type="radio" name="man_r5" value="1" /></div>
 464    <div class="rating">Definitely disagree<br /><input type="radio" name="man_r5" value="0" /></div>
 465    </td></tr><tr><td class="task">
 466
 467 .. raw:: html
 468
 469    </td>
 470    </tr>
 471    </table>
 472
 473 Virtualization
 474 --------------
 475
 476 The following questions are about your usage of systems for hardware
 477 virtualization in your research -- so-called **virtual machines**.
 478 Virtualization is a technology that allows running more than one operating
 479 systems on one machine at the same time.
 480
 481 .. raw:: html
 482
 483    <table>
 484    <tr class="oddrow">
 485    <td class="task">
 486
 487 How often do you use virtual machines for your research purposes?
 488
 489 .. raw:: html
 490
 491    </td><td class="response">
 492    <select name="virt_time" size="1">
 493    <option value="none" selected="selected" label="Select an option">Select an option</option>
 494    <option value="never" label="Never">Never</option>
 495    <option value="occasionally" label="Occasionally">Occasionally</option>
 496    <option value="often" label="Often">Often</option>
 497    <option value="always" label="Exclusively">Exclusively</option>
 498    </select><div style="font-size:60%">(skip the remaining questions of this section if "never")</div>
 499    </td></tr><tr><td class="task">
 500
 501 Which products for virtualization are you using?
 502
 503 .. raw:: html
 504
 505    </td><td class="response">
 506    <table><tr><td>
 507    <input type="checkbox" name="virt_prod" value="vmware" />VMWare<br />
 508    <input type="checkbox" name="virt_prod" value="virtualbox" />VirtualBox<br />
 509    <input type="checkbox" name="virt_prod" value="parallels" />Parallels<br />
 510    <input type="checkbox" name="virt_prod" value="qemu" />QEMU<br />
 511    </td><td>
 512    <input type="checkbox" name="virt_prod" value="virtualpc" />Virtual PC<br />
 513    <input type="checkbox" name="virt_prod" value="xen" />Xen<br />
 514    <input type="checkbox" name="virt_prod" value="kvm" />KVM<br />
 515    <input type="checkbox" name="virt_prod" value="other" />
 516    <input name="virt_other" type="text" size="20" maxlength="40">
 517    </td></tr></table>
 518    </td></tr><tr class="oddrow"><td>
 519
 520 What **guest operating system** is running inside virtual machine?
 521
 522 .. raw:: html
 523
 524    </td><td class="response">
 525    <select name="virt_guest_os" size="1">
 526
 527 .. raw:: html
 528    :file: select_os_options.inc
 529
 530 .. raw:: html
 531
 532    </select>
 533    </td></tr><tr><td>
 534
 535 What **host operating system** are the virtual machines running on?
 536
 537 .. raw:: html
 538
 539    </td><td class="response">
 540    <select name="virt_host_os" size="1">
 541
 542 .. raw:: html
 543    :file: select_os_options.inc
 544
 545 .. raw:: html
 546
 547    </select>
 548    </td></tr><tr><td colspan="2">
 549
 550 What are your reasons for employing virtualization in you research?
 551 Please indicate how much you agree to the following statements
 552
 553 .. raw:: html
 554
 555    </td></tr><tr class="oddrow"><td class="task">
 556
 557 I can run software that is otherwise incompatible with my system
 558
 559 .. raw:: html
 560
 561    </td><td class="response">
 562    <div class="rating">Definitely agree<br /><input type="radio" name="virt_r1" value="3" /></div>
 563    <div class="rating">Mostly agree<br /><input type="radio" name="virt_r1" value="2" /></div>
 564    <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r1" value="1" /></div>
 565    <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r1" value="0" /></div>
 566    </td></tr><tr><td class="task">
 567
 568 I have the ability to easily create a snapshot of my whole analysis environment
 569
 570 .. raw:: html
 571
 572    </td><td class="response">
 573    <div class="rating">Definitely agree<br /><input type="radio" name="virt_r2" value="3" /></div>
 574    <div class="rating">Mostly agree<br /><input type="radio" name="virt_r2" value="2" /></div>
 575    <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r2" value="1" /></div>
 576    <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r2" value="0" /></div>
 577    </td></tr><tr class="oddrow"><td class="task">
 578
 579
 580 I can take my complete analysis environment with me and run it on different
 581 machines
 582
 583 .. raw:: html
 584
 585    </td><td class="response">
 586    <div class="rating">Definitely agree<br /><input type="radio" name="virt_r3" value="3" /></div>
 587    <div class="rating">Mostly agree<br /><input type="radio" name="virt_r3" value="2" /></div>
 588    <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r3" value="1" /></div>
 589    <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r3" value="0" /></div>
 590    </td></tr><tr><td class="task">
 591
 592 The performance of a virtual machine is sufficient for routine application in my
 593 research
 594
 595 .. raw:: html
 596
 597    </td><td class="response">
 598    <div class="rating">Definitely agree<br /><input type="radio" name="virt_r4" value="3" /></div>
 599    <div class="rating">Mostly agree<br /><input type="radio" name="virt_r4" value="2" /></div>
 600    <div class="rating">Mostly disagree<br /><input type="radio" name="virt_r4" value="1" /></div>
 601    <div class="rating">Definitely disagree<br /><input type="radio" name="virt_r4" value="0" /></div>
 602    </td>
 603    </tr>
 604    </table>
 605
 606
 607 Resources for scientific software
 608 ---------------------------------
 609
 610 Where do you obtain scientific software that you employ in your research? Please
 611 check all items that apply
 612
 613 .. raw:: html
 614
 615    <table class="questionaire">
 616    <tr class="oddrow">
 617    <td class="response"><input type="checkbox" name="software_resource" value="vendor" /></td><td>
 618
 619 Directly from vendor or project website
 620
 621 .. raw:: html
 622
 623    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="retailer" /></td><td>
 624
 625 Retailer
 626
 627 .. raw:: html
 628
 629    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="os" /></td><td>
 630
 631 Comes with the operating system
 632
 633 .. raw:: html
 634
 635    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="cpan" /></td><td>
 636
 637 `Comprehensive Perl Archive Network (CPAN) <http://www.cpan.org>`_
 638
 639 .. raw:: html
 640
 641    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="cran" /></td><td>
 642
 643 `Comprehensive R Archive Network (CRAN) <http://cran.r-project.org>`_
 644
 645 .. raw:: html
 646
 647    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="epel" /></td><td>
 648
 649 `Extra Packages for Enterprise Linux (EPEL) <http://fedoraproject.org/wiki/EPEL>`_
 650
 651 .. raw:: html
 652
 653    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="fink" /></td><td>
 654
 655 `Fink <http://www.finkproject.org>`_
 656
 657 .. raw:: html
 658
 659    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="freebsdports" /></td><td>
 660
 661 `FreeBSD ports <http://www.freebsd.org/ports/science.html>`_
 662
 663 .. raw:: html
 664
 665    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="incf" /></td><td>
 666
 667 `International neuroinformatics Coordinating Facility (INCF) Research Tools <http://www.incf.org/resources/research-tools>`_
 668
 669 .. raw:: html
 670
 671    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value=macports"" /></td><td>
 672
 673 `Macports <http://www.macports.org>`_
 674
 675 .. raw:: html
 676
 677    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="matlabcentral" /></td><td>
 678
 679 `Matlab Central <http://www.mathworks.com/matlabcentral>`_
 680
 681 .. raw:: html
 682
 683    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value=neurodebian"" /></td><td>
 684
 685 `NeuroDebian <http://neuro.debian.net>`_
 686
 687 .. raw:: html
 688
 689    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="nitrc" /></td><td>
 690
 691 `Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC) <http://www.nitrc.org>`_
 692
 693 .. raw:: html
 694
 695    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="pypi" /></td><td>
 696
 697 `Python Package Index (PyPi) <http://pypi.python.org>`_
 698
 699 .. raw:: html
 700
 701    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="pythonbundles" /></td><td>
 702
 703 Python bundles: `Enthought Python <http://www.enthought.com/products/index.php>`_, `Python(x,y) <http://www.pythonxy.com/>`_
 704
 705 .. raw:: html
 706
 707    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="sourceforge" /></td><td>
 708
 709 `Sourceforge <http://www.sourceforge.net>`_
 710
 711 .. raw:: html
 712
 713    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="other" /></td><td>
 714    <input name="software_resource_other" type="text" size="40" maxlength="200">
 715    </td></tr></table>
 716
 717 Software selection
 718 ------------------
 719
 720 Please select all software that you are using in your research.
 721
 722 Generic computing/scripting/programming environments
 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 724
 725 .. raw:: html
 726
 727    <table class="questionaire"><tr>
 728    <td class="response"><input type="checkbox" name="sw" value="cpp" />C/C++</td>
 729    <td class="response"><input type="checkbox" name="sw" value="idl" />IDL</td>
 730    <td class="response"><input type="checkbox" name="sw" value="lisrel" />LISREL</td>
 731    <td class="response"><input type="checkbox" name="sw" value="maple" />Maple</td>
 732    <td class="response"><input type="checkbox" name="sw" value="mathcad" />Mathcad</td>
 733    <td class="response"><input type="checkbox" name="sw" value="mathematica" />Mathematica</td>
 734    </tr><tr class="oddrow">
 735    <td class="response"><input type="checkbox" name="sw" value="matlab" />Matlab</td>
 736    <td class="response"><input type="checkbox" name="sw" value="octave" />Octave</td>
 737    <td class="response"><input type="checkbox" name="sw" value="perl" />Perl</td>
 738    <td class="response"><input type="checkbox" name="sw" value="python" />Python</td>
 739    <td class="response"><input type="checkbox" name="sw" value="r" />R</td>
 740    <td class="response"><input type="checkbox" name="sw" value="ruby" />Ruby</td>
 741    </tr><tr>
 742    <td class="response"><input type="checkbox" name="sw" value="scilab" />Scilab</td>
 743    <td class="response"><input type="checkbox" name="sw" value="spss" />SPSS</td>
 744    <td class="response"><input type="checkbox" name="sw" value="scirun" />SCIRun</td>
 745    <td class="response"><input type="checkbox" name="sw" value="shell" />Shell scripting</td>
 746    </tr></table>
 747
 748 Distributed computing - frameworks and controllers
 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 750
 751 .. raw:: html
 752
 753    <table class="questionaire"><tr>
 754    <td class="response"><input type="checkbox" name="sw" value="sge" />SGE</td>
 755    <td class="response"><input type="checkbox" name="sw" value="torque" />Torque/OpenPBS/Maui</td>
 756    <td class="response"><input type="checkbox" name="sw" value="condor" />Condor</td>
 757    <td class="response"><input type="checkbox" name="sw" value="globus" />Globus</td>
 758    <td class="response"><input type="checkbox" name="sw" value="mpi" />MPI (any)</td>
 759    <td class="response"><input type="checkbox" name="sw" value="ipython" />IPython</td>
 760    </tr></table>
 761
 762 Imaging
 763 ~~~~~~~
 764
 765 .. raw:: html
 766
 767    <table class="questionaire"><tr>
 768    <td class="response"><input type="checkbox" name="sw" value="3dslicer" />3D Slicer</td>
 769    <td class="response"><input type="checkbox" name="sw" value="afni" />AFNI</td>
 770    <td class="response"><input type="checkbox" name="sw" value="aeskulap" />Aeskulap</td>
 771    <td class="response"><input type="checkbox" name="sw" value="amide" />Amide</td>
 772    </tr><tr class="oddrow">
 773    <td class="response"><input type="checkbox" name="sw" value="birn" />BIRN Tools</td>
 774    <td class="response"><input type="checkbox" name="sw" value="brainstools" />BRAINS Tools</td>
 775    <td class="response"><input type="checkbox" name="sw" value="bioimgsuite" />Bioimage Suite</td>
 776    <td class="response"><input type="checkbox" name="sw" value="brainmap" />BrainMap</td>
 777    </tr><tr>
 778    <td class="response"><input type="checkbox" name="sw" value="brainvisa" />BrainVISA/Anatomist</td>
 779    <td class="response"><input type="checkbox" name="sw" value="brainvoyager" />BrainVoyager</td>
 780    <td class="response"><input type="checkbox" name="sw" value="cmtk" />CMTK</td>
 781    <td class="response"><input type="checkbox" name="sw" value="caret" />Caret</td>
 782    </tr><tr class="oddrow">
 783    <td class="response"><input type="checkbox" name="sw" value="connectomviewer" />ConnectomeViewer</td>
 784    <td class="response"><input type="checkbox" name="sw" value="dsi" />DSI Studio</td>
 785    <td class="response"><input type="checkbox" name="sw" value="dtitk" />DTI-TK</td>
 786    <td class="response"><input type="checkbox" name="sw" value="trackvis" />Diffusion Toolkit/Trackvis</td>
 787    </tr><tr>
 788    <td class="response"><input type="checkbox" name="sw" value="fsl" />FSL</td>
 789    <td class="response"><input type="checkbox" name="sw" value="fiji" />Fiji</td>
 790    <td class="response"><input type="checkbox" name="sw" value="freesurfer" />FreeSurfer</td>
 791    <td class="response"><input type="checkbox" name="sw" value="itksnap" />ITK-SNAP</td>
 792    </tr><tr class="oddrow">
 793    <td class="response"><input type="checkbox" name="sw" value="imagej" />ImageJ</td>
 794    <td class="response"><input type="checkbox" name="sw" value="invesalius" />Invesalius</td>
 795    <td class="response"><input type="checkbox" name="sw" value="loni" />LONI</td>
 796    <td class="response"><input type="checkbox" name="sw" value="lipsia" />Lipsia</td>
 797    </tr><tr>
 798    <td class="response"><input type="checkbox" name="sw" value="mango" />Mango</td>
 799    <td class="response"><input type="checkbox" name="sw" value="mipav" />MIPAV/JIST</td>
 800    <td class="response"><input type="checkbox" name="sw" value="mni" />MNI tools</td>
 801    <td class="response"><input type="checkbox" name="sw" value="mricron" />MRIcron</td>
 802    </tr><tr class="oddrow">
 803    <td class="response"><input type="checkbox" name="sw" value="mrtrix" />MRtrix</td>
 804    <td class="response"><input type="checkbox" name="sw" value="mvpa" />Matlab MVPA toolbox</td>
 805    <td class="response"><input type="checkbox" name="sw" value="nibabel" />NiBabel/PyNIfTI</td>
 806    <td class="response"><input type="checkbox" name="sw" value="nipy" />NiPy/NiTime/DiPy/NiPype</td>
 807    </tr><tr>
 808    <td class="response"><input type="checkbox" name="sw" value="pymvpa" />PyMVPA</td>
 809    <td class="response"><input type="checkbox" name="sw" value="rest" />REST</td>
 810    <td class="response"><input type="checkbox" name="sw" value="spm" />SPM</td>
 811    <td class="response"><input type="checkbox" name="sw" value="v3d" />V3D</td>
 812    </tr><tr class="oddrow">
 813    <td class="response"><input type="checkbox" name="sw" value="voxbo" />VoxBo</td>
 814    </tr></table>
 815
 816 Data management
 817 ~~~~~~~~~~~~~~~
 818
 819 .. raw:: html
 820
 821    <table class="questionaire"><tr>
 822    <td class="response"><input type="checkbox" name="sw" value="xnat" />XNAT/PyXNAT/...</td>
 823    <td class="response"><input type="checkbox" name="sw" value="hid" />Human Imaging Database (HID)</td>
 824    </tr></table>
 825
 826 Neural systems modeling
 827 ~~~~~~~~~~~~~~~~~~~~~~~
 828
 829 .. raw:: html
 830
 831    <table class="questionaire"><tr>
 832    <td class="response"><input type="checkbox" name="sw" value="brian" />Brian</td>
 833    <td class="response"><input type="checkbox" name="sw" value="iqr" />iqr</td>
 834    <td class="response"><input type="checkbox" name="sw" value="iNVT" />iNVT</td>
 835    <td class="response"><input type="checkbox" name="sw" value="neuron" />NEURON</td>
 836    <td class="response"><input type="checkbox" name="sw" value="nest" />NEST</td>
 837    <td class="response"><input type="checkbox" name="sw" value="genesis" />Genesis</td>
 838    <td class="response"><input type="checkbox" name="sw" value="moose" />Moose</td>
 839    <td class="response"><input type="checkbox" name="sw" value="pcsim" />PCSIM</td>
 840    <td class="response"><input type="checkbox" name="sw" value="pynn" />PyNN</td>
 841    <td class="response"><input type="checkbox" name="sw" value="topographica" />Topographica</td>
 842    </tr></table>
 843
 844 Electrophysiology, MEG/EEG
 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~
 846
 847 .. raw:: html
 848
 849    <table class="questionaire"><tr>
 850    <td class="response"><input type="checkbox" name="sw" value="besa" />BESA</td>
 851    <td class="response"><input type="checkbox" name="sw" value="biosig" />BioSig</td>
 852    <td class="response"><input type="checkbox" name="sw" value="brainstorm" />BrainStorm</td>
 853    <td class="response"><input type="checkbox" name="sw" value="chronus" />Chronus</td>
 854    <td class="response"><input type="checkbox" name="sw" value="eeglab" />EEGLAB</td>
 855    <td class="response"><input type="checkbox" name="sw" value="elekta" />Elekta Neuromag</td>
 856    </tr><tr class="oddrow">
 857    <td class="response"><input type="checkbox" name="sw" value="fieldtrip" />Fieldtrip</td>
 858    <td class="response"><input type="checkbox" name="sw" value="klustakwik" />KlustaKwik</td>
 859    <td class="response"><input type="checkbox" name="sw" value="loreta" />LORETA/sLORETA</td>
 860    <td class="response"><input type="checkbox" name="sw" value="mne" />MNE suite</td>
 861    <td class="response"><input type="checkbox" name="sw" value="neuroexplorer" />NeuroExplorer</td>
 862    <td class="response"><input type="checkbox" name="sw" value="openmeeg" />OpenMEEG</td>
 863    </tr><tr>
 864    <td class="response"><input type="checkbox" name="sw" value="openelectrophy" />Openelectrophy</td>
 865    <td class="response"><input type="checkbox" name="sw" value="rtxi" />RTXI</td>
 866    <td class="response"><input type="checkbox" name="sw" value="relacs" />Relacs</td>
 867    <td class="response"><input type="checkbox" name="sw" value="trellis" />?Trellis-neuro</td>
 868    </tr></table>
 869
 870 Brain-computer interface
 871 ~~~~~~~~~~~~~~~~~~~~~~~~
 872
 873 .. raw:: html
 874
 875    <table class="questionaire"><tr>
 876    <td class="response"><input type="checkbox" name="sw" value="bci2000" />BCI2000</td>
 877    <td class="response"><input type="checkbox" name="sw" value="openvibe" />OpenVIBE</td>
 878    <td class="response"><input type="checkbox" name="sw" value="pyff" />Pyff</td>
 879    </tr></table>
 880
 881 Hardware interface/Data acquisition
 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 883
 884 .. raw:: html
 885
 886    <table class="questionaire"><tr>
 887    <td class="response"><input type="checkbox" name="sw" value="comedi" />Comedi</td>
 888    <td class="response"><input type="checkbox" name="sw" value="epics" />EPICS</td>
 889    <td class="response"><input type="checkbox" name="sw" value="mx" />MX</td>
 890    </tr></table>
 891
 892 Real-time solutions
 893 ~~~~~~~~~~~~~~~~~~~
 894
 895 .. raw:: html
 896
 897    <table class="questionaire"><tr>
 898    <td class="response"><input type="checkbox" name="sw" value="rtai" />RTAI</td>
 899    <td class="response"><input type="checkbox" name="sw" value="xenomai" />Xenomai</td>
 900    <td class="response"><input type="checkbox" name="sw" value="rtlinux" />RTLinux</td>
 901    <td class="response"><input type="checkbox" name="sw" value="preempt_rt" />PREEMPT_RT</td>
 902    </tr></table>
 903
 904 Psychophysics/Experimental control
 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 906
 907 .. raw:: html
 908
 909    <table class="questionaire"><tr>
 910    <td class="response"><input type="checkbox" name="sw" value="dmdx" />DMDX</td>
 911    <td class="response"><input type="checkbox" name="sw" value="eprime" />E-Prime</td>
 912    <td class="response"><input type="checkbox" name="sw" value="presentation" />Presentation</td>
 913    <td class="response"><input type="checkbox" name="sw" value="psychopy" />PsychoPy</td>
 914    <td class="response"><input type="checkbox" name="sw" value="pyepl" />PyEPL</td>
 915    <td class="response"><input type="checkbox" name="sw" value="psychtoolbox" />Psychtoolbox</td>
 916    </tr><tr class="oddrow">
 917    <td class="response"><input type="checkbox" name="sw" value="psytoolkit" />Psytoolkit</td>
 918    <td class="response"><input type="checkbox" name="sw" value="opensesame" />OpenSesame</td>
 919    <td class="response"><input type="checkbox" name="sw" value="visionegg" />VisionEgg</td>
 920    <td class="response"><input type="checkbox" name="sw" value="tscope" />Tscope</td>
 921    </tr></table>
 922
 923 Other
 924 ~~~~~
 925
 926 .. raw:: html
 927
 928    <table class="questionaire"><tr>
 929    <td class="response"><input type="checkbox" name="sw" value="other" />
 930    <input name="sw_other" type="text" size="40" maxlength="200"> <span style="font-size:70%">(comma-separated list)</span></td>
 931    </tr></table>
 932
 933 ---------------------------------------------------------------
 934
 935 Thanks for filling out the questionaire. Upon successful submission you will
 936 be presented with some statistics computed from all previous participants.
 937
 938 .. raw:: html
 939
 940    <input value="Go" type="submit">
 941    <div id="server_response"></div>
 942    </form>
 943
 944
 945