sandbox/survey.rst

   1
   2 Scientific software usage in neuroscience research
   3 ==================================================
   4
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   6
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  40
  41    <form name="nss_survey" enctype="application/x-www-form-urlencoded">
  42
  43 Personal background
  44 -------------------
  45
  46 .. raw:: html
  47
  48    <table>
  49    <tr class="oddrow">
  50    <td>
  51
  52 Which country are working in?
  53
  54 .. raw:: html
  55
  56    </td><td class="response">
  57
  58 .. raw:: html
  59    :file: select_country.inc
  60
  61 .. raw:: html
  62
  63    </td></tr><tr><td>
  64
  65 Where are you working?
  66
  67 .. raw:: html
  68
  69    </td><td class="response">
  70    <select name="position" size="1">
  71    <option value="none" selected="selected" label="Select an option"></option>
  72    <option value="edu_priv" label="Higher education (privately funded)"></option>
  73    <option value="edu_pub" label="Higher education (publicly funded)"></option>
  74    <option value="research_priv" label="Research institution (privately funded)"></option>
  75    <option value="research_pub" label="Research institution (publicly funded)"></option>
  76    <option value="company" label="Company"></option>
  77    </select>
  78    </td></tr><tr class="oddrow"><td>
  79
  80 What is your position?
  81
  82 .. raw:: html
  83
  84    </td><td class="response">
  85    <select name="position" size="1">
  86    <option value="none" selected="selected" label="Select an option"></option>
  87    <option value="undergrad" label="Undergraduate student"></option>
  88    <option value="graduate" label="PhD student"></option>
  89    <option value="postdoc" label="Postdoc"></option>
  90    <option value="professor" label="Professor/Supervisor"></option>
  91    <option value="ra" label="Research assistant"></option>
  92    <option value="researcher" label="Other researcher"></option>
  93    <option value="sysadmin" label="System administrator"></option>
  94    </select>
  95    </td></tr><tr><td>
  96
  97 What type of data are you working with? Please check all items that apply.
  98
  99 .. raw:: html
 100
 101    </td><td class="response">
 102    <table><tr><td>
 103    <input type="checkbox" name="datamod" value="behav" />Behavioral<br />
 104    <input type="checkbox" name="datamod" value="mri" />MRI/fMRI/DTI<br />
 105    <input type="checkbox" name="datamod" value="meeg" />EEG/MEG<br />
 106    </td><td>
 107    <input type="checkbox" name="datamod" value="pet" />PET/SPECT<br />
 108    <input type="checkbox" name="datamod" value="ephys" />Electrophysiology<br />
 109    <input type="checkbox" name="datamod" value="spectro" />Microspectroscopy<br />
 110    <input type="checkbox" name="datamod" value="other" />
 111    <input name="other_datamodality" type="text" size="20" maxlength="40">
 112    </td></tr></table>
 113    </td></tr><tr class="oddrow"><td>
 114
 115 Are you developing software that is intended to be used by other researchers?
 116
 117 .. raw:: html
 118
 119    </td><td class="response">
 120    <span><input type="radio" name="developer" value="yes" />Yes</span>
 121    <span><input type="radio" name="developer" value="no" checked="checked" />No</span>
 122    </td>
 123    </tr>
 124    </table>
 125
 126 Personal scientific software environment
 127 ----------------------------------------
 128
 129 Here are a few questions about your personal scientific software environment
 130 for research activities like data acquisition, computational modeling, and data
 131 analysis. You might be running this on your laptop, desktop, personal
 132 workstation or any other machine where **you decide** what software you are
 133 using, and you typically also have permission to **install it yourself**.  If
 134 you are operating different environments, please describe the one that you find
 135 most productive for your research purposes. If you don't have a machine that
 136 you administer yourself, instead, please indicate what kind of scientific
 137 software environment you would like to be doing your research in.
 138
 139 .. raw:: html
 140
 141    <table>
 142    <tr>
 143    <td>
 144
 145 What type of hardware are you using?
 146
 147 .. raw:: html
 148
 149    </td><td class="response">
 150    <select name="pref_env" size="1">
 151    <option value="none" selected="selected" label="Select an option"></option>
 152    <option value="laptop" label="Laptop/Portable device"></option>
 153    <option value="desktop" label="Commodity desktop"></option>
 154    <option value="workstation" label="High-performance workstation"></option>
 155    <option value="cluster" label="Compute cluster"></option>
 156    <option value="grid" label="Grid/Cloud-computing facility"></option>
 157    </select>
 158    </td></tr><tr><td>
 159
 160 What operating system is this environment running on?
 161
 162 .. raw:: html
 163
 164    </td><td class="response">
 165    <select name="pref_env" size="1">
 166
 167 .. raw:: html
 168    :file: select_os_options.inc
 169
 170 .. raw:: html
 171
 172    </select>
 173    </td></tr><tr><td>
 174
 175 What fraction of your research activity time do you spend in this software
 176 environment as opposed to any other environment that you migh have access to?
 177
 178 .. raw:: html
 179
 180    </td><td class="response">
 181    <select name="pref_time" size="1">
 182    <option value="none" selected="selected" label="Select an option"></option>
 183    <option value="notime" label="None/I don't have this environment"></option>
 184    <option value="little" label="Less then half of the time"></option>
 185    <option value="most" label="More than half of the time"></option>
 186    <option value="always" label="All of the time"></option>
 187    </select>
 188    </td></tr><tr><td>
 189
 190 How much time do you spend each month on maintaining this environment?  This
 191 includes the time spent on operating system (security) upgrades, as well as
 192 installing and updating scientific software.
 193
 194 .. raw:: html
 195
 196    </td><td class="response">
 197    <input name="maint_time" type="text" size="3" maxlength="3"> hours per month
 198    </td>
 199    </tr>
 200    </table>
 201
 202 ---------------------------------------------------------------
 203
 204 Please indicate how much you agree to the following statements.
 205
 206 .. raw:: html
 207
 208    <table>
 209    <tr><th colspan="2" style="text-align:left;font-weight:normal">
 210
 211 *I prefer this particular scientific software environment because ...*
 212
 213 .. raw:: html
 214
 215    </th></tr><tr class="oddrow">
 216    <td class="task">
 217
 218 ... the developers of an important research software recommend it
 219
 220 .. raw:: html
 221
 222    </td><td class="response">
 223    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 224    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 225    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 226    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 227    </td></tr><tr><td class="task">
 228
 229
 230 ... of the variety of available research software for this environment
 231
 232 .. raw:: html
 233
 234    </td><td class="response">
 235    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 236    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 237    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 238    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 239    </td></tr><tr class="oddrow"><td class="task">
 240
 241
 242 ... of the availibility of commercial support
 243
 244 .. raw:: html
 245
 246    </td><td class="response">
 247    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 248    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 249    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 250    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 251    </td></tr><tr><td class="task">
 252
 253
 254 ... many of my colleagues use something similar
 255
 256 .. raw:: html
 257
 258    </td><td class="response">
 259    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 260    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 261    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 262    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 263    </td></tr><tr class="oddrow"><td class="task">
 264
 265
 266 ... it is popular and I can get solutions for problems from web forums and mailing lists
 267
 268 .. raw:: html
 269
 270    </td><td class="response">
 271    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 272    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 273    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 274    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 275    </td></tr><tr><td class="task">
 276
 277
 278 ... I rely on an particular application that only runs in this environment
 279
 280 .. raw:: html
 281
 282    </td><td class="response">
 283    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 284    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 285    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 286    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 287    </td></tr><tr class="oddrow"><td class="task">
 288
 289
 290 ... it has adequate support for all required hardware
 291
 292 .. raw:: html
 293
 294    </td><td class="response">
 295    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 296    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 297    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 298    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 299    </td></tr><tr><td class="task">
 300
 301
 302 ... I have the necessary technical skills to maintain this environment myself
 303
 304 .. raw:: html
 305
 306    </td><td class="response">
 307    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 308    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 309    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 310    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 311    </td>
 312    </tr>
 313    </table>
 314
 315
 316 Managed scientific software environment
 317 ---------------------------------------
 318
 319 The following questions are about a managed environment of scientific software
 320 that is provided to you to carry out computing and data analysis related
 321 research activities. Such an environment is typically managed by **dedicated IT
 322 staff**, and **you don't have permissions to install arbitrary software**. This
 323 environment may be shared by many researchers in a lab, a whole research
 324 institution, or even be publicly accessible. If you have access to multiple
 325 environments of this kind, please describe the one that offers most support for
 326 your particular research purposes.
 327
 328
 329 .. raw:: html
 330
 331    <table class="questionaire">
 332    <tr>
 333    <td>
 334
 335 What type of hardware is this software environment running on?
 336
 337 .. raw:: html
 338
 339    </td><td class="response">
 340    <select name="pref_env" size="1">
 341    <option value="none" selected="selected" label="Select an option"></option>
 342    <option value="laptop" label="Laptop/Portable device"></option>
 343    <option value="desktop" label="Commodity desktop"></option>
 344    <option value="workstation" label="High-performance workstation"></option>
 345    <option value="cluster" label="Compute cluster"></option>
 346    <option value="grid" label="Grid/Cloud-computing facility"></option>
 347    </select>
 348    </td></tr><tr><td>
 349
 350
 351 What operating system is this environment running on?
 352
 353 .. raw:: html
 354
 355    </td><td class="response">
 356    <select name="pref_env" size="1">
 357
 358 .. raw:: html
 359    :file: select_os_options.inc
 360
 361 .. raw:: html
 362
 363    </select>
 364    </td></tr><tr><td>
 365
 366 What fraction of time do you spend in this environment during your research
 367 activities?
 368
 369 .. raw:: html
 370
 371    </td><td class="response">
 372    <select name="pref_time" size="1">
 373    <option value="none" selected="selected" label="Select an option"></option>
 374    <option value="notime" label="None/I don't use this"></option>
 375    <option value="little" label="Less then half of the time"></option>
 376    <option value="most" label="More than half of the time"></option>
 377    <option value="always" label="All of the time"></option>
 378    </select>
 379    </td>
 380    </tr>
 381    </table>
 382
 383 ---------------------------------------------------------------
 384
 385 How much do you agree to the following statements?
 386
 387 .. raw:: html
 388
 389    <table>
 390    <tr class="oddrow">
 391    <td class="task">
 392
 393 This environment provides me with the best available tools for my research.
 394
 395 .. raw:: html
 396
 397    </td><td class="response">
 398    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 399    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 400    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 401    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 402    </td></tr><tr><td class="task">
 403
 404 The support staff solves all my technical problems and addresses my demands in
 405 a timely fashion.
 406
 407 .. raw:: html
 408
 409    </td><td class="response">
 410    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 411    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 412    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 413    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 414    </td></tr><tr class="oddrow"><td class="task">
 415
 416 There are always enough licenses for essential commerical software tools.
 417
 418 .. raw:: html
 419
 420    </td><td class="response">
 421    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 422    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 423    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 424    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 425    </td></tr><tr><td class="task">
 426
 427 I need to deploy additional software to be able to perform my research in this environment.
 428
 429 .. raw:: html
 430
 431    </td><td class="response">
 432    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 433    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 434    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 435    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 436    </td></tr><tr class="oddrow"><td class="task">
 437
 438
 439 Using this managed environment is more cost effective than operating a suitable
 440 environment myself.
 441
 442 .. raw:: html
 443
 444    </td><td class="response">
 445    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 446    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 447    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 448    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 449    </td></tr><tr><td class="task">
 450
 451 .. raw:: html
 452
 453    </td>
 454    </tr>
 455    </table>
 456
 457 Virtualization
 458 --------------
 459
 460 The following questions are about your usage of systems for hardware
 461 virtualization in your research -- so-called **virtual machines**.
 462 Virtualization is a technology that allows running more than one operating
 463 systems on one machine at the same time.
 464
 465 .. raw:: html
 466
 467    <table>
 468    <tr class="oddrow">
 469    <td class="task">
 470
 471 How often do you use virtual machines for your research purposes?
 472
 473 .. raw:: html
 474
 475    </td><td class="response">
 476    <select name="pref_time" size="1">
 477    <option value="none" selected="selected" label="Select an option"></option>
 478    <option value="never" label="Never"></option>
 479    <option value="occasionally" label="Occasionally"></option>
 480    <option value="often" label="Often"></option>
 481    <option value="always" label="Exclusively"></option>
 482    </select><div style="font-size:60%">(skip the remaining questions of this section if "never")</div>
 483    </td></tr><tr><td class="task">
 484
 485 Which products for virtualization are you using?
 486
 487 .. raw:: html
 488
 489    </td><td class="response">
 490    <table><tr><td>
 491    <input type="checkbox" name="" value="" />VMWare<br />
 492    <input type="checkbox" name="" value="" />VirtualBox<br />
 493    <input type="checkbox" name="" value="" />Parallels<br />
 494    <input type="checkbox" name="" value="" />QEMU<br />
 495    </td><td>
 496    <input type="checkbox" name="" value="" />Virtual PC<br />
 497    <input type="checkbox" name="" value="" />Xen<br />
 498    <input type="checkbox" name="" value="" />KVM<br />
 499    <input type="checkbox" name="" value="other" />
 500    <input name="other_vm" type="text" size="20" maxlength="40">
 501    </td></tr></table>
 502    </td></tr><tr class="oddrow"><td>
 503
 504 What **guest operating system** is running inside virtual machine?
 505
 506 .. raw:: html
 507
 508    </td><td class="response">
 509    <select name="pref_env" size="1">
 510
 511 .. raw:: html
 512    :file: select_os_options.inc
 513
 514 .. raw:: html
 515
 516    </select>
 517    </td></tr><tr><td>
 518
 519 What **host operating system** are the virtual machines running on?
 520
 521 .. raw:: html
 522
 523    </td><td class="response">
 524    <select name="pref_env" size="1">
 525
 526 .. raw:: html
 527    :file: select_os_options.inc
 528
 529 .. raw:: html
 530
 531    </select>
 532    </td></tr><tr><td colspan="2">
 533
 534 What are your reasons for employing virtualization in you research?
 535 Please indicate how much you agree to the following statements.
 536
 537 .. raw:: html
 538
 539    </td></tr><tr class="oddrow"><td class="task">
 540
 541 I can run software that is otherwise incompatible with my system.
 542
 543 .. raw:: html
 544
 545    </td><td class="response">
 546    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 547    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 548    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 549    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 550    </td></tr><tr><td class="task">
 551
 552 I have the ability to easily create snapshot of my whole analysis environment.
 553
 554 .. raw:: html
 555
 556    </td><td class="response">
 557    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 558    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 559    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 560    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 561    </td></tr><tr class="oddrow"><td class="task">
 562
 563
 564 I can take my complete analysis environment with me and run in on different
 565 machines.
 566
 567 .. raw:: html
 568
 569    </td><td class="response">
 570    <div class="rating">Definitely agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 571    <div class="rating">Mostly agree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 572    <div class="rating">Mostly disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 573    <div class="rating">Definitely disagree<br /><input type="radio" name="inst_r1" value="yes" /></div>
 574    </td>
 575    </tr>
 576    </table>
 577
 578
 579 Resources for scientific software
 580 ---------------------------------
 581
 582 Where do you obtain scientific software that you employ in your research? Please
 583 check all items that apply.
 584
 585 .. raw:: html
 586
 587    <table class="questionaire">
 588    <tr class="oddrow">
 589    <td class="response"><input type="checkbox" name="software_resource" value="pet" /></td><td>
 590
 591 Directly form vendor or project website
 592
 593 .. raw:: html
 594
 595    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="" /></td><td>
 596
 597 Retailer
 598
 599 .. raw:: html
 600
 601    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="" /></td><td>
 602
 603 `Extra Packages for Enterprise Linux (EPEL) <http://fedoraproject.org/wiki/EPEL>`_
 604
 605 .. raw:: html
 606
 607    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="" /></td><td>
 608
 609 `Fink <http://www.finkproject.org>`_
 610
 611 .. raw:: html
 612
 613    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="" /></td><td>
 614
 615 `FreeBSD ports <http://www.freebsd.org/ports/science.html>`_
 616
 617 .. raw:: html
 618
 619    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="" /></td><td>
 620
 621 `International neuroinformatics Coordinating Facility (INCF) Research Tools <http://www.incf.org/resources/research-tools>`_
 622
 623 .. raw:: html
 624
 625    </td></tr><tr class="oddrow"><td><input type="checkbox" name="software_resource" value="" /></td><td>
 626
 627 `Macports <http://www.macports.org>`_
 628
 629 .. raw:: html
 630
 631    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="" /></td><td>
 632
 633 `NeuroDebian <http://neuro.debian.net>`_
 634
 635 .. raw:: html
 636
 637    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="" /></td><td>
 638
 639 `Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC) <http://www.nitrc.org>`_
 640
 641 .. raw:: html
 642
 643    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="" /></td><td>
 644
 645 `Python Package Index (PyPi) <http://pypi.python.org>`_
 646
 647 .. raw:: html
 648
 649    </td></tr><tr class="oddrow"><td class="response"><input type="checkbox" name="software_resource" value="" /></td><td>
 650
 651 `Sourceforge <http://www.sourceforge.net>`_
 652
 653 .. raw:: html
 654
 655    </td></tr><tr><td class="response"><input type="checkbox" name="software_resource" value="other" /></td><td>
 656    <input name="other_resource" type="text" size="40" maxlength="200">
 657    </td></tr></table>
 658
 659 Software selection
 660 ------------------
 661
 662 .. raw:: html
 663
 664    <input value="Go" type="button"
 665           onclick='JavaScript:xmlhttpPost("/cgi-bin/surveycollector.cgi")'>
 666
 667    <div id="result"></div>
 668    </form>
 669
 670
 671