1 #ifndef READOTUCOMMAND_H
2 #define READOTUCOMMAND_H
7 * Created by Sarah Westcott on 1/20/09.
8 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
12 #include <Carbon/Carbon.h>
15 #include "command.hpp"
16 #include "readmatrix.hpp"
17 #include "inputdata.h"
19 /* The read.otu command parameter options are listfile, sabundfile, rabundfile and orderfile.
20 The read.otu command should be in the following format:
21 read.otu(listfile=yourListFile, orderfile=yourOrderFile). The listfile, sabundfile or rabundfile are required, but only one may be used. */
25 class ReadOtuCommand : public Command {
32 GlobalData* globaldata;