8 * Created by Sarah Westcott on 6/8/09.
9 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
16 #include "mothurout.h"
17 #include "command.hpp"
19 /***********************************************************************/
24 OptionParser(string, map<string, string>&);
26 map<string, string> getParameters();
27 bool getNameFile(vector<string>);
29 map<string, string> parameters;
33 /***********************************************************************/