neurodebian.cfg

   1 [dde]
   2 pkgquery_url = http://dde.debian.net/dde/q/udd
   3
   4 [packages]
   5 # Packages listed in the following taskfiles will be featured on the website
   6 # _if_ they are also present in the repository
   7 select taskfiles =
   8  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-electrophysiology
   9  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  10  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  11  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  12  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  13
  14 # Additional selection filter (similar to 'select taskfiles'), only listing
  15 # package names
  16 select names = libnifti2 odin mitools afni-atlases python-pyssdh python-networkx
  17  r-cran-glmnet python-rpy2 python-nibabel-snapshot
  18  python-scikits-learn python-mdp python-mlpy python-openpyxl
  19
  20 # Information about prospective packages to be imported from taskfiles
  21 prospective =
  22  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-electrophysiology
  23  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  24  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  25  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  26  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  27
  28 [blend package aliases]
  29 # alias a package name from a blend taskfile to an arbitray number of additional
  30 # package names -- if the original name should appear in the package list it has
  31 # to be added as an alias as well
  32 mni-icbm152-nlin-2009 = mni-icbm152-nlin-2009a mni-icbm152-nlin-2009b mni-icbm152-nlin-2009c
  33 fsl = fsl fsl-doc fsl-atlases fsl-possum-data fsl-first-data fsl-feeds fsl-mni152-templates
  34 fslview = fslview fslview-doc
  35 python-mvpa = python-mvpa python-mvpa-snapshot
  36 libgiftiio-dev = libgiftiio-dev gifti-bin
  37 openmeeg-tools = openmeeg-tools libopenmeeg-dev python-openmeeg libopenmeeg1
  38 libbiosig-dev = libbiosig-dev python-biosig octave-biosig biosig-tools libbiosig0
  39 libgdf-dev = libgdf-dev libgdf0 libgdf0-dbg libgdf-dev gdf-tools octave-gdf matlab-gdf
  40
  41 [mirrors]
  42 de = http://apsy.gse.uni-magdeburg.de/debian
  43 gr = http://neurobot.bio.auth.gr/neurodebian
  44 us-ca = http://neurodeb.pirsquared.org
  45 us-nh = http://neuro.debian.net/debian
  46 us-tn = http://masi.vuse.vanderbilt.edu/neurodebian
  47
  48 [neurodebian]
  49 # Release files of all repositories to be contained in the website
  50 releases =
  51  http://neuro.debian.net/debian/dists/data/Release
  52  http://neuro.debian.net/debian/dists/dapper/Release
  53  http://neuro.debian.net/debian/dists/gutsy/Release
  54  http://neuro.debian.net/debian/dists/hardy/Release
  55  http://neuro.debian.net/debian/dists/intrepid/Release
  56  http://neuro.debian.net/debian/dists/jaunty/Release
  57  http://neuro.debian.net/debian/dists/karmic/Release
  58  http://neuro.debian.net/debian/dists/lucid/Release
  59  http://neuro.debian.net/debian/dists/maverick/Release
  60  http://neuro.debian.net/debian/dists/etch/Release
  61  http://neuro.debian.net/debian/dists/lenny/Release
  62  http://neuro.debian.net/debian/dists/squeeze/Release
  63  http://neuro.debian.net/debian/dists/sid/Release
  64
  65 [release codenames]
  66 # the 'data' entry should not be changed, as this exact setting also serves as
  67 # a test condition in the DDE code
  68 data = Datasets
  69 etch = Debian GNU/Linux 4.0 (etch)
  70 lenny = Debian GNU/Linux 5.0 (lenny)
  71 squeeze = Debian testing (squeeze)
  72 #squeeze = Debian 6.0 (squeeze)
  73 #wheezy = Debian testing (wheezy)
  74 sid = Debian unstable (sid)
  75 #dapper = Ubuntu 06.06 LTS "Dapper Drake" (dapper)
  76 #edgy = Ubuntu 06.10 "Edgy Eft" (edgy)
  77 #gutsy = Ubuntu 07.10 "Gutsy Gibbon" (gutsy)
  78 hardy = Ubuntu 08.04 LTS "Hardy Heron" (hardy)
  79 intrepid = Ubuntu 08.10 "Intrepid Ibex" (intrepid)
  80 jaunty = Ubuntu 09.04 "Jaunty Jackalope" (jaunty)
  81 karmic = Ubuntu 09.10 "Karmic Koala" (karmic)
  82 lucid = Ubuntu 10.04 LTS "Lucid Lynx" (lucid)
  83 maverick = Ubuntu 10.10 "Maverick Meerkat" (maverick)
  84 natty = Upcoming Ubuntu 11.04 "Natty Narwhal" (natty)
  85
  86 [release backport ids]
  87 # the purpose of these ids is to have version suffixes for backported packages
  88 # that allow proper sorting (upgradability) across distribution releases
  89 # For Debian we'll use ndXX (where XX is the version of the Debian release,
  90 # e.g. 50; analog to backports.org) and for Ubuntu we'll use ndXX.XX.
  91 data = nd
  92 etch = nd40
  93 lenny = nd50
  94 squeeze = nd60
  95 wheezy = nd70
  96 sid = nd
  97 hardy = nd08.04
  98 intrepid = nd08.10
  99 jaunty = nd09.04
 100 karmic = nd09.10
 101 lucid = nd10.04
 102 maverick = nd10.10
 103
 104 [nitrc ids]
 105 afni = 23
 106 ants = 130
 107 camino = 253
 108 caret = 34
 109 connectomeviewer = 355
 110 dicomnifti = 218
 111 fsl = 25
 112 fslview = 25
 113 gifti-bin = 75
 114 imagej = 256
 115 itksnap = 110
 116 libminc-dev = 129
 117 minc-tools = 129
 118 libgiftiio-dev = 75
 119 libnifti2 = 26
 120 libnifti-dev = 26
 121 nifti-bin = 26
 122 odin = 153
 123 mitools = 153
 124 mricron = 152
 125 mrtrix = 128
 126 python-mvpa = 162
 127 python-nipype = 325
 128 slicer = 50
 129 voxbo = 73
 130 mipav = 70
 131 jist = 228
 132