neurodebian.cfg

   1 [dde]
   2 pkgquery_url = http://dde.debian.net/dde/q/udd
   3
   4 [packages]
   5 # Packages listed in the following taskfiles will be featured on the website
   6 # _if_ they are also present in the repository
   7 select taskfiles =
   8  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-electrophysiology
   9  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  10  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  11  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling
  12  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  13  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  14
  15 # Additional selection filter (similar to 'select taskfiles'), only listing
  16 # package names
  17 select names = libnifti2 odin mitools afni-atlases python-pyssdh python-networkx
  18  r-cran-glmnet python-rpy2 python-nibabel-snapshot
  19  python-scikits-learn python-mdp python-mlpy python-openpyxl libgdf-dev matlab
  20
  21 # Information about prospective packages to be imported from taskfiles
  22 prospective =
  23  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-electrophysiology
  24  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  25  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  26  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling
  27  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  28  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  29
  30 [blend package aliases]
  31 # alias a package name from a blend taskfile to an arbitray number of additional
  32 # package names -- if the original name should appear in the package list it has
  33 # to be added as an alias as well
  34 mni-icbm152-nlin-2009 = mni-icbm152-nlin-2009a mni-icbm152-nlin-2009b mni-icbm152-nlin-2009c
  35 fsl = fsl fsl-doc fsl-atlases fsl-possum-data fsl-first-data fsl-feeds fsl-mni152-templates
  36 fslview = fslview fslview-doc
  37 python-mvpa = python-mvpa python-mvpa-snapshot
  38 libgiftiio-dev = libgiftiio-dev gifti-bin
  39 openmeeg-tools = openmeeg-tools libopenmeeg-dev python-openmeeg libopenmeeg1
  40 libbiosig-dev = libbiosig-dev python-biosig octave-biosig biosig-tools libbiosig0
  41 libgdf-dev = libgdf-dev libgdf0 libgdf0-dbg libgdf-dev gdf-tools octave-gdf matlab-gdf
  42 spm8 = matlab-spm8 spm8-common spm8-data spm8-doc
  43
  44 [mirrors]
  45 de = http://apsy.gse.uni-magdeburg.de/debian
  46 gr = http://neurobot.bio.auth.gr/neurodebian
  47 us-ca = http://neurodeb.pirsquared.org
  48 us-nh = http://neuro.debian.net/debian
  49 us-tn = http://masi.vuse.vanderbilt.edu/neurodebian
  50
  51 [neurodebian]
  52 # Release files of all repositories to be contained in the website
  53 releases =
  54  http://neuro.debian.net/debian/dists/data/Release
  55  http://neuro.debian.net/debian/dists/dapper/Release
  56  http://neuro.debian.net/debian/dists/gutsy/Release
  57  http://neuro.debian.net/debian/dists/hardy/Release
  58  http://neuro.debian.net/debian/dists/intrepid/Release
  59  http://neuro.debian.net/debian/dists/jaunty/Release
  60  http://neuro.debian.net/debian/dists/karmic/Release
  61  http://neuro.debian.net/debian/dists/lucid/Release
  62  http://neuro.debian.net/debian/dists/maverick/Release
  63  http://neuro.debian.net/debian/dists/etch/Release
  64  http://neuro.debian.net/debian/dists/lenny/Release
  65  http://neuro.debian.net/debian/dists/squeeze/Release
  66  http://neuro.debian.net/debian/dists/sid/Release
  67
  68 [release codenames]
  69 # the 'data' entry should not be changed, as this exact setting also serves as
  70 # a test condition in the DDE code
  71 data = Datasets
  72 etch = Debian GNU/Linux 4.0 (etch)
  73 lenny = Debian GNU/Linux 5.0 (lenny)
  74 squeeze = Debian testing (squeeze)
  75 #squeeze = Debian 6.0 (squeeze)
  76 #wheezy = Debian testing (wheezy)
  77 sid = Debian unstable (sid)
  78 #dapper = Ubuntu 06.06 LTS "Dapper Drake" (dapper)
  79 #edgy = Ubuntu 06.10 "Edgy Eft" (edgy)
  80 #gutsy = Ubuntu 07.10 "Gutsy Gibbon" (gutsy)
  81 hardy = Ubuntu 08.04 LTS "Hardy Heron" (hardy)
  82 intrepid = Ubuntu 08.10 "Intrepid Ibex" (intrepid)
  83 jaunty = Ubuntu 09.04 "Jaunty Jackalope" (jaunty)
  84 karmic = Ubuntu 09.10 "Karmic Koala" (karmic)
  85 lucid = Ubuntu 10.04 LTS "Lucid Lynx" (lucid)
  86 maverick = Ubuntu 10.10 "Maverick Meerkat" (maverick)
  87 natty = Upcoming Ubuntu 11.04 "Natty Narwhal" (natty)
  88
  89 [release backport ids]
  90 # the purpose of these ids is to have version suffixes for backported packages
  91 # that allow proper sorting (upgradability) across distribution releases
  92 # For Debian we'll use ndXX (where XX is the version of the Debian release,
  93 # e.g. 50; analog to backports.org) and for Ubuntu we'll use ndXX.XX.
  94 data = nd
  95 etch = nd40
  96 lenny = nd50
  97 squeeze = nd60
  98 wheezy = nd70
  99 sid = nd
 100 hardy = nd08.04
 101 intrepid = nd08.10
 102 jaunty = nd09.04
 103 karmic = nd09.10
 104 lucid = nd10.04
 105 maverick = nd10.10
 106
 107 [nitrc ids]
 108 afni = 23
 109 ants = 130
 110 camino = 253
 111 caret = 34
 112 connectomeviewer = 355
 113 dicomnifti = 218
 114 fsl = 25
 115 fslview = 25
 116 gifti-bin = 75
 117 imagej = 256
 118 itksnap = 110
 119 jist = 228
 120 libminc-dev = 129
 121 libgiftiio-dev = 75
 122 libnifti2 = 26
 123 libnifti-dev = 26
 124 matlab-spm8 = 24
 125 minc-tools = 129
 126 mipav = 70
 127 mitools = 153
 128 mricron = 152
 129 mrtrix = 128
 130 nifti-bin = 26
 131 odin = 153
 132 python-mvpa = 162
 133 python-nipype = 325
 134 slicer = 50
 135 spm8 = 24
 136 voxbo = 73
 137