neurodebian.cfg

   1 [dde]
   2 pkgquery_url = http://dde.debian.net/dde/q/udd
   3
   4 [packages]
   5 # Packages listed in the following taskfiles will be featured on the website
   6 # _if_ they are also present in the repository
   7 select taskfiles =
   8  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing
   9  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci
  10  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology
  11  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  12  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  13  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling
  14  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics
  15  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  16  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  17  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/psychology
  18
  19 # Additional selection filter (similar to 'select taskfiles'), only listing
  20 # package names
  21 select names = libnifti2 odin mitools afni-atlases python-pyssdh python-networkx
  22  r-cran-glmnet python-rpy2 python-nibabel-snapshot
  23  python-scikits-learn python-mdp python-mlpy python-openpyxl libgdf-dev matlab-support
  24  svgtune rorden-mri-tutorial caret-data
  25
  26 # Information about prospective packages to be imported from taskfiles
  27 prospective =
  28  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing
  29  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci
  30  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology
  31  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  32  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  33  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling
  34  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics
  35  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  36  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  37
  38 [blend package aliases]
  39 # alias a package name from a blend taskfile to an arbitray number of additional
  40 # package names -- if the original name should appear in the package list it has
  41 # to be added as an alias as well
  42 mni-icbm152-nlin-2009 = mni-icbm152-nlin-2009a mni-icbm152-nlin-2009b mni-icbm152-nlin-2009c
  43 fsl = fsl fsl-doc fsl-atlases fsl-possum-data fsl-first-data fsl-feeds fsl-mni152-templates
  44 fslview = fslview fslview-doc
  45 python-mvpa = python-mvpa python-mvpa-snapshot
  46 libgiftiio-dev = libgiftiio-dev gifti-bin
  47 openmeeg-tools = openmeeg-tools libopenmeeg-dev python-openmeeg libopenmeeg1
  48 libbiosig-dev = libbiosig-dev python-biosig octave-biosig biosig-tools libbiosig0
  49 libgdf-dev = libgdf-dev libgdf0 libgdf0-dbg libgdf-dev gdf-tools octave-gdf matlab-gdf
  50 spm8 = matlab-spm8 spm8-data spm8-doc
  51 libfreenect-dev = libfreenect0.0 libfreenect-dev libfreenect-demos python-freenect freenect
  52 psychtoolbox-3 = octave-psychtoolbox-3 matlab-psychtoolbox-3 psychtoolbox-3-doc
  53
  54 [mirrors]
  55 de = http://apsy.gse.uni-magdeburg.de/debian
  56 gr = http://neurobot.bio.auth.gr/neurodebian
  57 us-ca = http://neurodeb.pirsquared.org
  58 us-nh = http://neuro.debian.net/debian
  59 us-tn = http://masi.vuse.vanderbilt.edu/neurodebian
  60
  61 [neurodebian]
  62 # Release files of all repositories to be contained in the website
  63 releases =
  64  http://neuro.debian.net/debian/dists/data/Release
  65  http://neuro.debian.net/debian/dists/dapper/Release
  66  http://neuro.debian.net/debian/dists/gutsy/Release
  67  http://neuro.debian.net/debian/dists/hardy/Release
  68  http://neuro.debian.net/debian/dists/intrepid/Release
  69  http://neuro.debian.net/debian/dists/jaunty/Release
  70  http://neuro.debian.net/debian/dists/karmic/Release
  71  http://neuro.debian.net/debian/dists/lucid/Release
  72  http://neuro.debian.net/debian/dists/maverick/Release
  73  http://neuro.debian.net/debian/dists/etch/Release
  74  http://neuro.debian.net/debian/dists/lenny/Release
  75  http://neuro.debian.net/debian/dists/squeeze/Release
  76  http://neuro.debian.net/debian/dists/wheezy/Release
  77  http://neuro.debian.net/debian/dists/sid/Release
  78
  79 [release codenames]
  80 # the 'data' entry should not be changed, as this exact setting also serves as
  81 # a test condition in the DDE code
  82 data = Datasets (data)
  83 #etch = Debian GNU/Linux 4.0 (etch)
  84 lenny = Debian GNU/Linux 5.0 (lenny)
  85 squeeze = Debian GNU/Linux 6.0 (squeeze)
  86 wheezy = Debian testing (wheezy)
  87 sid = Debian unstable (sid)
  88 #dapper = Ubuntu 06.06 LTS "Dapper Drake" (dapper)
  89 #edgy = Ubuntu 06.10 "Edgy Eft" (edgy)
  90 #gutsy = Ubuntu 07.10 "Gutsy Gibbon" (gutsy)
  91 #hardy = Ubuntu 08.04 LTS "Hardy Heron" (hardy)
  92 #intrepid = Ubuntu 08.10 "Intrepid Ibex" (intrepid)
  93 jaunty = Ubuntu 09.04 "Jaunty Jackalope" (jaunty)
  94 karmic = Ubuntu 09.10 "Karmic Koala" (karmic)
  95 lucid = Ubuntu 10.04 LTS "Lucid Lynx" (lucid)
  96 maverick = Ubuntu 10.10 "Maverick Meerkat" (maverick)
  97 natty = Upcoming Ubuntu 11.04 "Natty Narwhal" (natty)
  98
  99 [release backport ids]
 100 # the purpose of these ids is to have version suffixes for backported packages
 101 # that allow proper sorting (upgradability) across distribution releases
 102 # For Debian we'll use ndXX (where XX is the version of the Debian release,
 103 # e.g. 50; analog to backports.org) and for Ubuntu we'll use ndXX.XX.
 104 data = nd
 105 etch = nd40
 106 lenny = nd50
 107 squeeze = nd60
 108 wheezy = nd70
 109 sid = nd
 110 hardy = nd08.04
 111 intrepid = nd08.10
 112 jaunty = nd09.04
 113 karmic = nd09.10
 114 lucid = nd10.04
 115 maverick = nd10.10
 116
 117 [nitrc ids]
 118 afni = 23
 119 ants = 130
 120 camino = 253
 121 caret = 34
 122 connectomeviewer = 355
 123 dicomnifti = 218
 124 fsl = 25
 125 fslview = 25
 126 gifti-bin = 75
 127 imagej = 256
 128 itksnap = 110
 129 jist = 228
 130 libminc-dev = 129
 131 libgiftiio-dev = 75
 132 libnifti2 = 26
 133 libnifti-dev = 26
 134 matlab-spm8 = 24
 135 minc-tools = 129
 136 mipav = 70
 137 mitools = 153
 138 mricron = 152
 139 mrtrix = 128
 140 nifti-bin = 26
 141 odin = 153
 142 python-mvpa = 162
 143 python-nipype = 325
 144 slicer = 50
 145 spm8 = 24
 146 voxbo = 73
 147