3 \title{Write Tree File in Nexus Format}
5 write.nexus(..., file = "", translate = TRUE, original.data = NULL)
8 \item{\dots}{either (i) a single object of class \code{"phylo"}, (ii) a
9 series of such objects separated by commas, or (iii) a list
10 containing such objects.}
11 \item{file}{a file name specified by either a variable of mode character,
12 or a double-quoted string; if \code{file = ""} (the default) then the
13 tree is written on the standard output connection.}
14 \item{translate}{a logical, if \code{TRUE} (the default) a translation
15 of the tip labels is done which are replaced in the parenthetic
16 representation with tokens.}
17 \item{original.data}{deprecated; will be removed soon.}
20 This function writes trees in a file with the NEXUS format.
23 If several trees are given, they must have all the same tip labels.
25 If among the objects given some are not trees of class \code{"phylo"},
26 they are simply skipped and not written to the file.
29 None (invisible `NULL').
32 Maddison, D. R., Swofford, D. L. and Maddison, W. P. (1997) NEXUS: an
33 extensible file format for systematic information. \emph{Systematic
34 Biology}, \bold{46}, 590--621.
37 \author{Emmanuel Paradis}
39 \code{\link{read.nexus}}, \code{\link{read.tree}},
40 \code{\link{write.tree}}, \code{\link{read.nexus.data}},
41 \code{\link{write.nexus.data}}