3 \title{Gamma-Statistic of Pybus and Harvey}
8 \item{phy}{an object of class \code{"phylo"}.}
11 This function computes the gamma-statistic which summarizes the
12 information contained in the inter-node intervals of a phylogeny. It
13 is assumed that the tree is ultrametric. Note that the function does
14 not check that the tree is effectively ultrametric, so if it is not,
15 the returned result may not be meaningful.
18 a numeric vector of length one.
21 The gamma-statistic is a summary of the information contained in the
22 inter-node intervals of a phylogeny; it follows, under the assumption
23 that the clade diversified with constant rates, a normal distribution
24 with mean zero and standard-deviation unity (Pybus and Harvey
25 2000). Thus, the null hypothesis that the clade diversified with
26 constant rates may be tested with \code{2*(1 -
27 pnorm(abs(gammaStat(phy))))} for a two-tailed test, or \code{1 -
28 pnorm(abs(gammaStat(phy)))} for a one-tailed test, both returning
29 the corresponding P-value.
32 Pybus, O. G. and Harvey, P. H. (2000) Testing macro-evolutionary
33 models using incomplete molecular phylogenies. \emph{Proceedings of
34 the Royal Society of London. Series B. Biological Sciences},
35 \bold{267}, 2267--2272.
37 \author{Emmanuel Paradis}
39 \code{\link{branching.times}}, \code{\link{ltt.plot}}, \code{\link{skyline}}