1 #ifndef LISTSEQSCOMMAND_H
2 #define LISTSEQSCOMMAND_H
8 * Created by Sarah Westcott on 7/8/09.
9 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
13 #include "command.hpp"
15 class ListSeqsCommand : public Command {
19 ListSeqsCommand(string);
23 vector<string> setParameters();
24 string getCommandName() { return "list.seqs"; }
25 string getCommandCategory() { return "Sequence Processing"; }
27 string getHelpString();
28 string getOutputPattern(string);
29 string getCitation() { return "http://www.mothur.org/wiki/List.seqs"; }
30 string getDescription() { return "lists sequences from a list, fasta, name, group, alignreport or taxonomy file"; }
33 void help() { m->mothurOut(getHelpString()); }
37 vector<string> names, outputNames;
38 string fastafile, namefile, groupfile, countfile, alignfile, inputFileName, outputDir, listfile, taxfile;