1 #ifndef LISTSEQSCOMMAND_H
2 #define LISTSEQSCOMMAND_H
8 * Created by Sarah Westcott on 7/8/09.
9 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
13 #include "command.hpp"
15 class ListSeqsCommand : public Command {
19 ListSeqsCommand(string);
22 vector<string> getRequiredParameters();
23 vector<string> getValidParameters();
24 vector<string> getRequiredFiles();
25 map<string, vector<string> > getOutputFiles() { return outputTypes; }
30 vector<string> names, outputNames;
31 map<string, vector<string> > outputTypes;
32 string fastafile, namefile, groupfile, alignfile, inputFileName, outputDir, listfile, taxfile;