1 #ifndef GETSEQSCOMMAND_H
2 #define GETSEQSCOMMAND_H
8 * Created by Sarah Westcott on 7/8/09.
9 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
13 #include "command.hpp"
15 class GetSeqsCommand : public Command {
19 GetSeqsCommand(string);
23 vector<string> setParameters();
24 string getCommandName() { return "get.seqs"; }
25 string getCommandCategory() { return "Sequence Processing"; }
26 string getHelpString();
29 void help() { m->mothurOut(getHelpString()); }
34 vector<string> outputNames;
35 string accnosfile, accnosfile2, fastafile, namefile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir;