]> git.donarmstrong.com Git - paml.git/blob - examples/TipDate.FluH1/H1.NodeNumbers.tre
import paml4.8
[paml.git] / examples / TipDate.FluH1 / H1.NodeNumbers.tre
1 #NEXUS\r
2 begin taxa;\r
3         dimensions ntax=289;\r
4         taxlabels\r
5         1_179_Avian_H1N6_USA_1976\r
6         2_165_Avian_H1N1_Canada_1977\r
7         3_177_Avian_H1N1_Canada_1977\r
8         4_105_Avian_H1N1_Canada_1976\r
9         5_267_Avian_H1N1_Canada_1976\r
10         6_195_Avian_H1N6_Canada_1977\r
11         7_162_Avian_H1N1_Canada_1977\r
12         8_213_Avian_H1N5_USA_1978\r
13         9_164_Avian_H1N1_Canada_1979\r
14         10_163_Avian_H1N1_Canada_1979\r
15         11_158_Avian_H1N1_USA_1981\r
16         12_309_Avian_H1N1_USA_1980\r
17         13_153_Avian_H1N5_Canada_1981\r
18         14_156_Avian_H1N1_Canada_2002\r
19         15_196_Avian_H1N1_Canada_1998\r
20         16_180_Avian_H1N9_USA_1987\r
21         17_274_Avian_H1N1_USA_1987\r
22         18_279_Avian_H1N1_USA_1980\r
23         19_116_Avian_H1N1_USA_1985\r
24         20_106_Avian_H1N1_USA_1981\r
25         21_199_Avian_H1N2_USA_1982\r
26         22_155_Avian_H1N1_Canada_1988\r
27         23_169_Avian_H1N1_USA_1987\r
28         24_264_Avian_H1N1_USA_1986\r
29         25_197_Avian_H1N1_USA_1990\r
30         26_289_Avian_H1N1_USA_1993\r
31         27_255_Avian_H1N1_USA_1994\r
32         28_181_Avian_H1N1_USA_1993\r
33         29_200_Avian_H1N1_USA_1993\r
34         30_154_Avian_H1N1_Canada_1996\r
35         31_198_Avian_H1N1_USA_1999\r
36         32_223_Avian_H1N1_USA_2002\r
37         33_224_Avian_H1N1_USA_2007\r
38         34_233_Avian_H1N1_USA_2005\r
39         35_182_Avian_H1N6_USA_2002\r
40         36_302_Avian_H1N1_USA_2003\r
41         37_303_Avian_H1N1_USA_2003\r
42         38_157_Avian_H1N3_NewZealand_1976\r
43         39_125_Avian_H1N1_Japan_1977\r
44         40_285_Avian_H1N1_HongKong_1979\r
45         41_132_Avian_H1N1_Australia_1980\r
46         42_102_Avian_H1N1_Japan_1996\r
47         43_126_Avian_H1N9_Japan_1998\r
48         44_307_Avian_H1N1_Italy_2003\r
49         45_276_Avian_H1N1_Italy_2007\r
50         46_277_Avian_H1N1_Italy_2006\r
51         47_133_Avian_H1N1_Germany_1977\r
52         48_248_Avian_H1_HongKong_1977\r
53         49_134_Swine_H1N1_Netherlands_1980[&!color=#-16777063]\r
54         50_234_Swine_H1N1_Belgium_1979[&!color=#-16777063]\r
55         51_237_Swine_H1N1_France_1984[&!color=#-16777063]\r
56         52_107_Swine_H1N1_Netherlands_1985[&!color=#-16777063]\r
57         53_117_Swine_H1N1_Belgium_1983[&!color=#-16777063]\r
58         54_135_Swine_H1N1_Italy_1987[&!color=#-16777063]\r
59         55_149_Swine_H1N1_Germany_1995[&!color=#-16777063]\r
60         56_235_Swine_H1N1_France_1995[&!color=#-16777063]\r
61         57_288_Swine_H1N1_Germany_1992[&!color=#-16777063]\r
62         58_227_Swine_H1N1_Spain_1991[&!color=#-16777063]\r
63         59_226_Swine_H1N1_France_1985[&!color=#-16777063]\r
64         60_238_Swine_H1N1_UnitedKingdom_1992[&!color=#-16777063]\r
65         61_210_Swine_H1N1_UnitedKingdom_1995[&!color=#-16777063]\r
66         62_236_Swine_H1N1_UnitedKingdom_1996[&!color=#-16777063]\r
67         63_225_Swine_H1N1_UnitedKingdom_1993[&!color=#-16777063]\r
68         64_212_Swine_H1N1_UnitedKingdom_1999[&!color=#-16777063]\r
69         65_246_Swine_H1N1_UnitedKingdom_1994[&!color=#-16777063]\r
70         66_211_Swine_H1N1_UnitedKingdom_1998[&!color=#-16777063]\r
71         67_247_Swine_H1N1_UnitedKingdom_1997[&!color=#-16777063]\r
72         68_141_Swine_H1N1_Italy_1997[&!color=#-16777063]\r
73         69_123_Swine_H1N1_Italy_1996[&!color=#-16777063]\r
74         70_140_Swine_H1N1_Italy_1998[&!color=#-16777063]\r
75         71_191_Swine_H1N1_Italy_1997[&!color=#-16777063]\r
76         72_310_Swine_H1N1_Germany_1993[&!color=#-16777063]\r
77         73_228_Swine_H1N1_Denmark_1993[&!color=#-16777063]\r
78         74_305_Swine_H1N1_Belgium_1998[&!color=#-16777063]\r
79         75_168_Swine_H1N1_Spain_2003[&!color=#-16777063]\r
80         76_159_Swine_H1N1_Spain_2004[&!color=#-16777063]\r
81         77_278_Swine_H1N1_Hungary_2006[&!color=#-16777063]\r
82         78_124_Swine_H1N1_France_1999[&!color=#-16777063]\r
83         79_304_Swine_H1N1_China_2007[&!color=#-16777063]\r
84         80_287_Swine_H1N1_Germany_2003[&!color=#-16777063]\r
85         81_167_Swine_H1N1_Spain_2003[&!color=#-16777063]\r
86         82_192_Swine_H1N2_Germany_2000[&!color=#-16777063]\r
87         83_1_Human_H1N1_USA_1918[&!color=#-6750208]\r
88         84_3_Human_H1N1_UnitedKingdom_1933[&!color=#-6750208]\r
89         85_2_Human_H1N1_UnitedKingdom_1933[&!color=#-6750208]\r
90         86_23_Human_H1_Japan_1967[&!color=#-6750208]\r
91         87_7_Human_H1N1_Australia_1935[&!color=#-6750208]\r
92         88_6_Human_H1N1_USA_1935[&!color=#-6750208]\r
93         89_8_Human_H1N1_1936[&!color=#-6750208]\r
94         90_4_Human_H1N1_PuertoRico_1934[&!color=#-6750208]\r
95         91_5_Human_H1N1_PuertoRico_1934[&!color=#-6750208]\r
96         92_10_Human_H1N1_USA_1942[&!color=#-6750208]\r
97         93_11_Human_H1N1_USA_1943[&!color=#-6750208]\r
98         94_12_Human_H1N1_USA_1943[&!color=#-6750208]\r
99         95_13_Human_H1N1_USA_1945[&!color=#-6750208]\r
100         96_9_Human_H1N1_USA_1940[&!color=#-6750208]\r
101         97_14_Human_H1N1_1946[&!color=#-6750208]\r
102         98_15_Human_H1N1_USA_1947[&!color=#-6750208]\r
103         99_16_Human_H1N1_USA_1947[&!color=#-6750208]\r
104         100_18_Human_H1N1_USA_1950[&!color=#-6750208]\r
105         101_22_Human_H1N1_USA_1957[&!color=#-6750208]\r
106         102_19_Human_H1N1_USA_1951[&!color=#-6750208]\r
107         103_20_Human_H1N1_Malaysia_1954[&!color=#-6750208]\r
108         104_17_Human_H1N1_USA_1948[&!color=#-6750208]\r
109         105_21_Human_H1N1_Russia_1954[&!color=#-6750208]\r
110         106_26_Human_H1N1_HongKong_1977_1954[&!color=#-6750208]\r
111         107_27_Human_H1N1_USA_1978_1955[&!color=#-6750208]\r
112         108_31_Human_H1N1_USA_1983_1960[&!color=#-6750208]\r
113         109_29_Human_H1N1_UnitedKingdom_1982_1959[&!color=#-6750208]\r
114         110_30_Human_H1N1_Fiji_1983_1960[&!color=#-6750208]\r
115         111_28_Human_H1N1_India_1980_1957[&!color=#-6750208]\r
116         112_33_Human_H1N1_USA_1986_1963[&!color=#-6750208]\r
117         113_36_Human_H1N1_Italy_1989_1966[&!color=#-6750208]\r
118         114_39_Human_H1N1_Mongolia_1991_1968[&!color=#-6750208]\r
119         115_35_Human_H1N1_Japan_1989_1966[&!color=#-6750208]\r
120         116_37_Human_H1N1_Italy_1989_1966[&!color=#-6750208]\r
121         117_38_Human_H1N1_USA_1991_1968[&!color=#-6750208]\r
122         118_44_Human_H1N1_USA_1995_1972[&!color=#-6750208]\r
123         119_43_Human_H1N1_Switzerland_1995_1972[&!color=#-6750208]\r
124         120_55_Human_H1N1_Australia_2000_1977[&!color=#-6750208]\r
125         121_41_Human_H1N1_USA_1995_1972[&!color=#-6750208]\r
126         122_48_Human_H1N1_Taiwan_1996_1973[&!color=#-6750208]\r
127         123_42_Human_H1N1_China_1995_1972[&!color=#-6750208]\r
128         124_45_Human_H1N1_USA_1995_1972[&!color=#-6750208]\r
129         125_47_Human_H1N1_USA_1996_1973[&!color=#-6750208]\r
130         126_40_Human_H1N1_China_1995_1972[&!color=#-6750208]\r
131         127_46_Human_H1N1_China_1996_1973[&!color=#-6750208]\r
132         128_52_Human_H1N1_HongKong_1998_1975[&!color=#-6750208]\r
133         129_49_Human_H1N1_Taiwan_1997_1974[&!color=#-6750208]\r
134         130_51_Human_H1N1_HongKong_1998_1975[&!color=#-6750208]\r
135         131_50_Human_H1N1_HongKong_1998_1975[&!color=#-6750208]\r
136         132_60_Human_H1N1_Taiwan_2002_1979[&!color=#-6750208]\r
137         133_54_Human_H1N1_NewCaledonia_1999_1976[&!color=#-6750208]\r
138         134_53_Human_H1N1_Taiwan_1999_1976[&!color=#-6750208]\r
139         135_56_Human_H1N1_USA_2000_1977[&!color=#-6750208]\r
140         136_57_Human_H1N1_NewZealand_2000_1977[&!color=#-6750208]\r
141         137_58_Human_H1N1_NewZealand_2000_1977[&!color=#-6750208]\r
142         138_61_Human_H1N2_USA_2002_1979[&!color=#-6750208]\r
143         139_62_Human_H1N2_Denmark_2003_1980[&!color=#-6750208]\r
144         140_64_Human_H1N2_USA_2003_1980[&!color=#-6750208]\r
145         141_59_Human_H1N1_Japan_2001_1978[&!color=#-6750208]\r
146         142_63_Human_H1N1_USA_2003_1980[&!color=#-6750208]\r
147         143_65_Human_H1N1_Denmark_2004_1981[&!color=#-6750208]\r
148         144_68_Human_H1N1_Australia_2005_1982[&!color=#-6750208]\r
149         145_79_Human_H1N1_USA_2007_1984[&!color=#-6750208]\r
150         146_76_Human_H1N1_USA_2006_1983[&!color=#-6750208]\r
151         147_82_Human_H1N1_USA_2007_1984[&!color=#-6750208]\r
152         148_72_Human_H1N1_Thailand_2006_1983[&!color=#-6750208]\r
153         149_77_Human_H1N1_SolomonIslands_2006_1983[&!color=#-6750208]\r
154         150_74_Human_H1N1_China_2006_1983[&!color=#-6750208]\r
155         151_75_Human_H1N1_China_2006_1983[&!color=#-6750208]\r
156         152_81_Human_H1N1_USA_2007_1984[&!color=#-6750208]\r
157         153_71_Human_H1N1_China_2006_1983[&!color=#-6750208]\r
158         154_73_Human_H1N1_China_2006_1983[&!color=#-6750208]\r
159         155_98_Human_H1N1_USA_2008_1985[&!color=#-6750208]\r
160         156_83_Human_H1N1_USA_2007_1984[&!color=#-6750208]\r
161         157_84_Human_H1N1_USA_2007_1984[&!color=#-6750208]\r
162         158_67_Human_H1N1_NewZealand_2004_1981[&!color=#-6750208]\r
163         159_97_Human_H1N1_Australia_2008_1985[&!color=#-6750208]\r
164         160_78_Human_H1N1_USA_2006_1983[&!color=#-6750208]\r
165         161_80_Human_H1N1_USA_2007_1984[&!color=#-6750208]\r
166         162_86_Human_H1N1_USA_2007_1984[&!color=#-6750208]\r
167         163_92_Human_H1N1_USA_2008_1985[&!color=#-6750208]\r
168         164_87_Human_H1N1_USA_2007_1984[&!color=#-6750208]\r
169         165_88_Human_H1N1_USA_2007_1984[&!color=#-6750208]\r
170         166_85_Human_H1N1_USA_2007_1984[&!color=#-6750208]\r
171         167_95_Human_H1N1_USA_2008_1985[&!color=#-6750208]\r
172         168_89_Human_H1N1_USA_2007_1984[&!color=#-6750208]\r
173         169_93_Human_H1N1_USA_2008_1985[&!color=#-6750208]\r
174         170_94_Human_H1N1_USA_2008_1985[&!color=#-6750208]\r
175         171_96_Human_H1N1_USA_2008_1985[&!color=#-6750208]\r
176         172_90_Human_H1N1_USA_2008_1985[&!color=#-6750208]\r
177         173_100_Human_H1N1_USA_2008_1985[&!color=#-6750208]\r
178         174_91_Human_H1N1_USA_2008_1985[&!color=#-6750208]\r
179         175_99_Human_H1N1_USA_2008_1985[&!color=#-6750208]\r
180         176_115_Swine_H1N1_USA_1930[&!color=#-16777063]\r
181         177_166_Swine_H1N1_1931[&!color=#-16777063]\r
182         178_292_Swine_H1N1_USA_1945[&!color=#-16777063]\r
183         179_243_Swine_H1N1_USA_1942[&!color=#-16777063]\r
184         180_244_Swine_H1N1_USA_1935[&!color=#-16777063]\r
185         181_232_Swine_H1N1_USA_1957[&!color=#-16777063]\r
186         182_104_Swine_H1N1_USA_1961[&!color=#-16777063]\r
187         183_293_Swine_H1N1_USA_1968[&!color=#-16777063]\r
188         184_219_Swine_H1N1_USA_1966[&!color=#-16777063]\r
189         185_207_Swine_H1N1_USA_1967[&!color=#-16777063]\r
190         186_190_Swine_H1N1_USA_1970[&!color=#-16777063]\r
191         187_188_Swine_H1N1_USA_1971[&!color=#-16777063]\r
192         188_257_Swine_H1N1_USA_1973[&!color=#-16777063]\r
193         189_202_Swine_H1N1_USA_1975[&!color=#-16777063]\r
194         190_308_Swine_H1N1_USA_1976[&!color=#-16777063]\r
195         191_171_Swine_H1N1_USA_1977[&!color=#-16777063]\r
196         192_240_Swine_H1N1_USA_1977[&!color=#-16777063]\r
197         193_217_Swine_H1N1_USA_1977[&!color=#-16777063]\r
198         194_242_Swine_H1N1_USA_1977[&!color=#-16777063]\r
199         195_214_Swine_H1N1_USA_1976[&!color=#-16777063]\r
200         196_170_Swine_H1N1_USA_1976[&!color=#-16777063]\r
201         197_178_Swine_H1N1_USA_1977[&!color=#-16777063]\r
202         198_205_Swine_H1N1_USA_1977[&!color=#-16777063]\r
203         199_184_Swine_H1N1_USA_1977[&!color=#-16777063]\r
204         200_187_Swine_H1N1_USA_1978[&!color=#-16777063]\r
205         201_144_Swine_H1N1_Japan_1977[&!color=#-16777063]\r
206         202_290_Swine_H1N1_UnitedKingdom_1993[&!color=#-16777063]\r
207         203_312_Swine_H1N1_UnitedKingdom_1986[&!color=#-16777063]\r
208         204_103_Swine_H1N1_Japan_1979[&!color=#-16777063]\r
209         205_113_Swine_H1N2_Japan_1996[&!color=#-16777063]\r
210         206_110_Swine_H1N2_Japan_2003[&!color=#-16777063]\r
211         207_128_Swine_H1N2_Japan_2006[&!color=#-16777063]\r
212         208_183_Swine_H1N1_USA_1976[&!color=#-16777063]\r
213         209_209_Swine_H1N1_USA_1978[&!color=#-16777063]\r
214         210_231_Swine_H1N1_USA_1977[&!color=#-16777063]\r
215         211_127_Swine_H1N2_Japan_1980[&!color=#-16777063]\r
216         212_145_Swine_H1N1_Japan_1981[&!color=#-16777063]\r
217         213_215_Swine_H1N1_USA_1976[&!color=#-16777063]\r
218         214_218_Swine_H1N1_USA_1977[&!color=#-16777063]\r
219         215_221_Swine_H1N1_USA_1978[&!color=#-16777063]\r
220         216_208_Swine_H1N1_USA_1978[&!color=#-16777063]\r
221         217_220_Swine_H1N1_USA_1978[&!color=#-16777063]\r
222         218_112_Swine_H1N2_Thailand_2005[&!color=#-16777063]\r
223         219_261_Swine_H1N1_Thailand_2005[&!color=#-16777063]\r
224         220_143_Swine_H1N1_Thailand_2004[&!color=#-16777063]\r
225         221_262_Swine_H1N1_Thailand_2005[&!color=#-16777063]\r
226         222_206_Swine_H1N1_USA_1980[&!color=#-16777063]\r
227         223_186_Swine_H1N1_USA_1979[&!color=#-16777063]\r
228         224_189_Swine_H1N1_USA_1980[&!color=#-16777063]\r
229         225_203_Swine_H1N1_Canada_1981[&!color=#-16777063]\r
230         226_216_Swine_H1N1_Canada_1981[&!color=#-16777063]\r
231         227_222_Swine_H1N1_USA_1987[&!color=#-16777063]\r
232         228_299_Swine_H1N1_USA_1992[&!color=#-16777063]\r
233         229_268_Swine_H1N1_Canada_2004[&!color=#-16777063]\r
234         230_281_Swine_H1N1_Canada_2003[&!color=#-16777063]\r
235         231_253_Swine_H1N1_Canada_2004[&!color=#-16777063]\r
236         232_301_Swine_H1_Canada_1991[&!color=#-16777063]\r
237         233_194_Swine_H1N2_Taiwan_2003[&!color=#-16777063]\r
238         234_282_Swine_H1N2_Taiwan_2004[&!color=#-16777063]\r
239         235_249_Swine_H1N1_Canada_2003[&!color=#-16777063]\r
240         236_251_Swine_H1N1_Canada_2003[&!color=#-16777063]\r
241         237_245_Swine_H1N1_USA_1986[&!color=#-16777063]\r
242         238_185_Swine_H1N1_USA_1985[&!color=#-16777063]\r
243         239_230_Swine_H1N1_USA_1987[&!color=#-16777063]\r
244         240_142_Swine_H1N1_Thailand_2000[&!color=#-16777063]\r
245         241_118_Swine_H1N1_USA_1997[&!color=#-16777063]\r
246         242_175_Swine_H1N2_USA_2001[&!color=#-16777063]\r
247         243_300_Swine_H1N1_USA_1988[&!color=#-16777063]\r
248         244_111_Swine_H1N1_Thailand_2003[&!color=#-16777063]\r
249         245_241_Swine_H1N1_USA_1988[&!color=#-16777063]\r
250         246_201_Swine_H1N1_USA_1988[&!color=#-16777063]\r
251         247_239_Swine_H1N1_China_2001[&!color=#-16777063]\r
252         248_294_Swine_H1N1_China_2005[&!color=#-16777063]\r
253         249_204_Swine_H1N1_USA_1991[&!color=#-16777063]\r
254         250_136_Swine_H1N1_USA_1997[&!color=#-16777063]\r
255         251_108_Swine_H1N1_USA_1997[&!color=#-16777063]\r
256         252_109_Swine_H1N1_USA_1998[&!color=#-16777063]\r
257         253_146_Swine_H1N1_USA_1998[&!color=#-16777063]\r
258         254_280_Swine_H1N2_China_2004[&!color=#-16777063]\r
259         255_284_Swine_H1N2_China_2005[&!color=#-16777063]\r
260         256_306_Swine_H1N2_China_2007[&!color=#-16777063]\r
261         257_271_Swine_H1N1_USA_1999[&!color=#-16777063]\r
262         258_148_Swine_H1N2_USA_2000[&!color=#-16777063]\r
263         259_138_Swine_H1N2_USA_2001[&!color=#-16777063]\r
264         260_272_Swine_H1N1_USA_2002[&!color=#-16777063]\r
265         261_172_Swine_H1N2_USA_2001[&!color=#-16777063]\r
266         262_120_Swine_H1N2_USA_2001[&!color=#-16777063]\r
267         263_193_Swine_H1N2_SouthKorea_2002[&!color=#-16777063]\r
268         264_160_Swine_H1N2_USA_2001[&!color=#-16777063]\r
269         265_260_Swine_H1N1_USA_2004[&!color=#-16777063]\r
270         266_296_Swine_H1N1_SouthKorea_2004[&!color=#-16777063]\r
271         267_297_Swine_H1N1_SouthKorea_2005[&!color=#-16777063]\r
272         268_174_Swine_H1N2_USA_2001[&!color=#-16777063]\r
273         269_147_Swine_H1N2_USA_2001[&!color=#-16777063]\r
274         270_258_Swine_H1N2_USA_2001[&!color=#-16777063]\r
275         271_139_Swine_H1N2_USA_2000[&!color=#-16777063]\r
276         272_101_Human_H1N1_USA_2009[&!color=#-6750208]\r
277         273_313_Human_H1N1_USA_2009[&!color=#-6750208]\r
278         274_269_Swine_H1N2_China_2006[&!color=#-16777063]\r
279         275_283_Swine_H1N2_China_2005[&!color=#-16777063]\r
280         276_119_Swine_H1N2_USA_1999[&!color=#-16777063]\r
281         277_173_Swine_H1N2_USA_2001[&!color=#-16777063]\r
282         278_121_Swine_H1N2_USA_2001[&!color=#-16777063]\r
283         279_122_Swine_H1N2_USA_2001[&!color=#-16777063]\r
284         280_137_Swine_H1N2_USA_2001[&!color=#-16777063]\r
285         281_263_Swine_H1N1_USA_2007[&!color=#-16777063]\r
286         282_273_Swine_H1N2_USA_2003[&!color=#-16777063]\r
287         283_151_Swine_H1N2_USA_2001[&!color=#-16777063]\r
288         284_259_Swine_H1N2_USA_2004[&!color=#-16777063]\r
289         285_291_Swine_H1N2_SouthKorea_2005[&!color=#-16777063]\r
290         286_266_Swine_H1N2_SouthKorea_2005[&!color=#-16777063]\r
291         287_298_Swine_H1N2_SouthKorea_2005[&!color=#-16777063]\r
292         288_265_Swine_H1N2_SouthKorea_2004[&!color=#-16777063]\r
293         289_275_Swine_H1N2_SouthKorea_2006[&!color=#-16777063]\r
294 ;\r
295 end;\r
296 \r
297 begin trees;\r
298 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242_Swine_H1N1_USA_1977:1.0)[&label=483]:1.0)[&label=481]:1.0,((195_214_Swine_H1N1_USA_1976:1.0,(196_170_Swine_H1N1_USA_1976:1.0,(197_178_Swine_H1N1_USA_1977:1.0,(198_205_Swine_H1N1_USA_1977:1.0,(199_184_Swine_H1N1_USA_1977:1.0,200_187_Swine_H1N1_USA_1978:1.0)[&label=489]:1.0)[&label=488]:1.0)[&label=487]:1.0)[&label=486]:1.0)[&label=485]:1.0,((201_144_Swine_H1N1_Japan_1977:1.0,((202_290_Swine_H1N1_UnitedKingdom_1993:1.0,203_312_Swine_H1N1_UnitedKingdom_1986:1.0)[&label=493]:1.0,(204_103_Swine_H1N1_Japan_1979:1.0,(205_113_Swine_H1N2_Japan_1996:1.0,(206_110_Swine_H1N2_Japan_2003:1.0,207_128_Swine_H1N2_Japan_2006:1.0)[&label=496]:1.0)[&label=495]:1.0)[&label=494]:1.0)[&label=492]:1.0)[&label=491]:1.0,((208_183_Swine_H1N1_USA_1976:1.0,(209_209_Swine_H1N1_USA_1978:1.0,210_231_Swine_H1N1_USA_1977:1.0)[&label=499]:1.0)[&label=498]:1.0,(((211_127_Swine_H1N2_Japan_1980:1.0,212_145_Swine_H1N1_Japan_1981:1.0)[&label=502]:1.0,213_215_Swine_H1N1_USA_1976:1.0)[&label=501]:1.0,(214_218_Swine_H1N1_USA_1977:1.0,(215_221_Swine_H1N1_USA_1978:1.0,(216_208_Swine_H1N1_USA_1978:1.0,(217_220_Swine_H1N1_USA_1978:1.0,((218_112_Swine_H1N2_Thailand_2005:1.0,(219_261_Swine_H1N1_Thailand_2005:1.0,(220_143_Swine_H1N1_Thailand_2004:1.0,221_262_Swine_H1N1_Thailand_2005:1.0)[&label=510]:1.0)[&label=509]:1.0)[&label=508]:1.0,(222_206_Swine_H1N1_USA_1980:1.0,(223_186_Swine_H1N1_USA_1979:1.0,((224_189_Swine_H1N1_USA_1980:1.0,(225_203_Swine_H1N1_Canada_1981:1.0,226_216_Swine_H1N1_Canada_1981:1.0)[&label=515]:1.0)[&label=514]:1.0,(((227_222_Swine_H1N1_USA_1987:1.0,228_299_Swine_H1N1_USA_1992:1.0)[&label=518]:1.0,((229_268_Swine_H1N1_Canada_2004:1.0,230_281_Swine_H1N1_Canada_2003:1.0)[&label=520]:1.0,(231_253_Swine_H1N1_Canada_2004:1.0,232_301_Swine_H1_Canada_1991:1.0)[&label=521]:1.0)[&label=519]:1.0)[&label=517]:1.0,((233_194_Swine_H1N2_Taiwan_2003:1.0,234_282_Swine_H1N2_Taiwan_2004:1.0)[&label=523]:1.0,((235_249_Swine_H1N1_Canada_2003:1.0,236_251_Swine_H1N1_Canada_2003:1.0)[&label=525]:1.0,(237_245_Swine_H1N1_USA_1986:1.0,(238_185_Swine_H1N1_USA_1985:1.0,(239_230_Swine_H1N1_USA_1987:1.0,(240_142_Swine_H1N1_Thailand_2000:1.0,((241_118_Swine_H1N1_USA_1997:1.0,242_175_Swine_H1N2_USA_2001:1.0)[&label=531]:1.0,(243_300_Swine_H1N1_USA_1988:1.0,((244_111_Swine_H1N1_Thailand_2003:1.0,245_241_Swine_H1N1_USA_1988:1.0)[&label=534]:1.0,(246_201_Swine_H1N1_USA_1988:1.0,((247_239_Swine_H1N1_China_2001:1.0,248_294_Swine_H1N1_China_2005:1.0)[&label=537]:1.0,((249_204_Swine_H1N1_USA_1991:1.0,(250_136_Swine_H1N1_USA_1997:1.0,(251_108_Swine_H1N1_USA_1997:1.0,(252_109_Swine_H1N1_USA_1998:1.0,253_146_Swine_H1N1_USA_1998:1.0)[&label=542]:1.0)[&label=541]:1.0)[&label=540]:1.0)[&label=539]:1.0,((254_280_Swine_H1N2_China_2004:1.0,(255_284_Swine_H1N2_China_2005:1.0,256_306_Swine_H1N2_China_2007:1.0)[&label=545]:1.0)[&label=544]:1.0,((257_271_Swine_H1N1_USA_1999:1.0,((258_148_Swine_H1N2_USA_2000:1.0,(259_138_Swine_H1N2_USA_2001:1.0,260_272_Swine_H1N1_USA_2002:1.0)[&label=550]:1.0)[&label=549]:1.0,(261_172_Swine_H1N2_USA_2001:1.0,(262_120_Swine_H1N2_USA_2001:1.0,(263_193_Swine_H1N2_SouthKorea_2002:1.0,(264_160_Swine_H1N2_USA_2001:1.0,(265_260_Swine_H1N1_USA_2004:1.0,(266_296_Swine_H1N1_SouthKorea_2004:1.0,267_297_Swine_H1N1_SouthKorea_2005:1.0)[&label=556]:1.0)[&label=555]:1.0)[&label=554]:1.0)[&label=553]:1.0)[&label=552]:1.0)[&label=551]:1.0)[&label=548]:1.0)[&label=547]:1.0,(268_174_Swine_H1N2_USA_2001:1.0,(269_147_Swine_H1N2_USA_2001:1.0,(270_258_Swine_H1N2_USA_2001:1.0,((271_139_Swine_H1N2_USA_2000:1.0,((272_101_Human_H1N1_USA_2009:1.0,273_313_Human_H1N1_USA_2009:1.0)[&label=563]:1.0,(274_269_Swine_H1N2_China_2006:1.0,275_283_Swine_H1N2_China_2005:1.0)[&label=564]:1.0)[&label=562]:1.0)[&label=561]:1.0,(276_119_Swine_H1N2_USA_1999:1.0,((277_173_Swine_H1N2_USA_2001:1.0,(278_121_Swine_H1N2_USA_2001:1.0,279_122_Swine_H1N2_USA_2001:1.0)[&label=568]:1.0)[&label=567]:1.0,(280_137_Swine_H1N2_USA_2001:1.0,((281_263_Swine_H1N1_USA_2007:1.0,282_273_Swine_H1N2_USA_2003:1.0)[&label=571]:1.0,(283_151_Swine_H1N2_USA_2001:1.0,((284_259_Swine_H1N2_USA_2004:1.0,285_291_Swine_H1N2_SouthKorea_2005:1.0)[&label=574]:1.0,(286_266_Swine_H1N2_SouthKorea_2005:1.0,(287_298_Swine_H1N2_SouthKorea_2005:1.0,(288_265_Swine_H1N2_SouthKorea_2004:1.0,289_275_Swine_H1N2_SouthKorea_2006:1.0)[&label=577]:1.0)[&label=576]:1.0)[&label=575]:1.0)[&label=573]:1.0)[&label=572]:1.0)[&label=570]:1.0)[&label=569]:1.0)[&label=566]:1.0)[&label=565]:1.0)[&label=560]:1.0)[&label=559]:1.0)[&label=558]:1.0)[&label=557]:1.0)[&label=546]:1.0)[&label=543]:1.0)[&label=538]:1.0)[&label=536]:1.0)[&label=535]:1.0)[&label=533]:1.0)[&label=532]:1.0)[&label=530]:1.0)[&label=529]:1.0)[&label=528]:1.0)[&label=527]:1.0)[&label=526]:1.0)[&label=524]:1.0)[&label=522]:1.0)[&label=516]:1.0)[&label=513]:1.0)[&label=512]:1.0)[&label=511]:1.0)[&label=507]:1.0)[&label=506]:1.0)[&label=505]:1.0)[&label=504]:1.0)[&label=503]:1.0)[&label=500]:1.0)[&label=497]:1.0)[&label=490]:1.0)[&label=484]:1.0)[&label=480]:1.0)[&label=479]:1.0)[&label=478]:1.0)[&label=476]:1.0)[&label=475]:1.0)[&label=474]:1.0)[&label=473]:1.0)[&label=472]:1.0)[&label=471]:1.0)[&label=470]:1.0)[&label=469]:1.0)[&label=465]:1.0)[&label=372]:1.0)[&label=290];\r
299 end;\r
300 \r
301 begin figtree;\r
302         set appearance.backgroundColorAttribute="User Selection";\r
303         set appearance.backgroundColour=#-1;\r
304         set appearance.branchColorAttribute="User Selection";\r
305         set appearance.branchLineWidth=1.0;\r
306         set appearance.foregroundColour=#-16777216;\r
307         set appearance.selectionColour=#-2144520576;\r
308         set branchLabels.colorAttribute="User Selection";\r
309         set branchLabels.displayAttribute="Branch times";\r
310         set branchLabels.fontName="sansserif";\r
311         set branchLabels.fontSize=8;\r
312         set branchLabels.fontStyle=0;\r
313         set branchLabels.isShown=false;\r
314         set branchLabels.significantDigits=4;\r
315         set layout.expansion=0;\r
316         set layout.layoutType="RECTILINEAR";\r
317         set layout.zoom=0;\r
318         set nodeBars.barWidth=4.0;\r
319         set nodeLabels.colorAttribute="User Selection";\r
320         set nodeLabels.displayAttribute="label";\r
321         set nodeLabels.fontName="sansserif";\r
322         set nodeLabels.fontSize=8;\r
323         set nodeLabels.fontStyle=0;\r
324         set nodeLabels.isShown=true;\r
325         set nodeLabels.significantDigits=4;\r
326         set polarLayout.alignTipLabels=false;\r
327         set polarLayout.angularRange=0;\r
328         set polarLayout.rootAngle=0;\r
329         set polarLayout.rootLength=100;\r
330         set polarLayout.showRoot=true;\r
331         set radialLayout.spread=0.0;\r
332         set rectilinearLayout.alignTipLabels=true;\r
333         set rectilinearLayout.curvature=0;\r
334         set rectilinearLayout.rootLength=100;\r
335         set scale.offsetAge=0.0;\r
336         set scale.rootAge=1.0;\r
337         set scale.scaleFactor=1.0;\r
338         set scale.scaleRoot=false;\r
339         set scaleAxis.automaticScale=true;\r
340         set scaleAxis.fontSize=8.0;\r
341         set scaleAxis.isShown=false;\r
342         set scaleAxis.lineWidth=1.0;\r
343         set scaleAxis.majorTicks=10.0;\r
344         set scaleAxis.origin=0.0;\r
345         set scaleAxis.reverseAxis=false;\r
346         set scaleAxis.showGrid=true;\r
347         set scaleAxis.significantDigits=4;\r
348         set scaleBar.automaticScale=true;\r
349         set scaleBar.fontSize=10.0;\r
350         set scaleBar.isShown=false;\r
351         set scaleBar.lineWidth=1.0;\r
352         set scaleBar.scaleRange=6.0;\r
353         set scaleBar.significantDigits=4;\r
354         set tipLabels.colorAttribute="User Selection";\r
355         set tipLabels.displayAttribute="Names";\r
356         set tipLabels.fontName="sansserif";\r
357         set tipLabels.fontSize=8;\r
358         set tipLabels.fontStyle=0;\r
359         set tipLabels.isShown=true;\r
360         set tipLabels.significantDigits=4;\r
361         set trees.order=true;\r
362         set trees.orderType="increasing";\r
363         set trees.rooting=false;\r
364         set trees.rootingType="User Selection";\r
365         set trees.transform=false;\r
366         set trees.transformType="cladogram";\r
367 end;\r
368 \r