6 *****************************************************************************
8 * Copyright (c) 2004, Luke Sheneman
11 * Redistribution and use in source and binary forms, with or without
12 * modification, are permitted provided that the following conditions
15 * + Redistributions of source code must retain the above copyright
16 * notice, this list of conditions and the following disclaimer.
17 * + Redistributions in binary form must reproduce the above copyright
18 * notice, this list of conditions and the following disclaimer in
19 * the documentation and/or other materials provided with the
21 * + The names of its contributors may not be used to endorse or promote
22 * products derived from this software without specific prior
25 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
26 * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
27 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
28 * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
29 * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
30 * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
31 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
32 * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
33 * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
34 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
35 * POSSIBILITY OF SUCH DAMAGE.
37 *****************************************************************************
39 * Distance matrix parser header file
41 *****************************************************************************
46 * sheneman@cs.uidaho.edu
51 #define _INC_DMAT_H_ 1
60 #define NJ_INITIAL_BUFSIZE 32
62 #define NJ_NAME_STATE 100
63 #define NJ_FLOAT_STATE 101
64 #define NJ_WS_STATE 102
65 #define NJ_EOF_STATE 103
67 #define NJ_PARSE_SYMMETRIC 100
68 #define NJ_PARSE_LOWER 101
69 #define NJ_PARSE_UPPER 102
70 #define NJ_PARSE_UNKNOWN 103
73 /* some data structures */
74 typedef struct _NJ_DIST_TOKEN_STRUCT {
84 /* some function prototypes */
87 NJ_parse_distance_matrix(NJ_ARGS *nj_args);
90 NJ_output_matrix(NJ_ARGS *nj_args,
97 #endif /* _INC_DMAT_H_ */