2 $:.unshift File.join(File.dirname(__FILE__),'..','lib')
4 # Copyright (C) 2007-2010 Martin A. Hansen.
6 # This program is free software; you can redistribute it and/or
7 # modify it under the terms of the GNU General Public License
8 # as published by the Free Software Foundation; either version 2
9 # of the License, or (at your option) any later version.
11 # This program is distributed in the hope that it will be useful,
12 # but WITHOUT ANY WARRANTY; without even the implied warranty of
13 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 # GNU General Public License for more details.
16 # You should have received a copy of the GNU General Public License
17 # along with this program; if not, write to the Free Software
18 # Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
20 # http://www.gnu.org/copyleft/gpl.html
22 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
24 # This software is part of the Biopieces framework (www.biopieces.org).
26 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
29 require 'maasha/fastq'
33 class FastqTest < Test::Unit::TestCase
35 @io = StringIO.new("@test1\nATCG\n+\nABCD\n@test2\natcg\n+test2\n@ABG\n")
36 @fastq = Fastq.new(@io)
39 def test_Fastq_get_entry_obtains_the_correct_seq_name
40 assert_equal("test1", @fastq.get_entry.seq_name)
43 def test_Fasta_get_entry_obtains_the_correct_type
44 fastq = Fastq.new(@io, 'DNA')
45 assert_equal("dna", fastq.get_entry.type)
48 def test_Fastq_get_entry_with_two_entries_obtain_correct
49 assert_equal("ATCG", @fastq.get_entry.seq)
50 assert_equal("atcg", @fastq.get_entry.seq)
53 def test_Fastq_each_loop_ends_correctly
54 @fastq.each do |entry|