1 Author: Martin Asser Hansen - Copyright (C) - All rights reserved
3 Contact: mail@maasha.dk
7 License: GNU General Public License version 2 (http://www.gnu.org/copyleft/gpl.html)
9 Description: Inverts an alignment showing only non-mathing residues using the first sequence as reference.
11 Usage: ... | $script [options]
13 Options: [-s | --soft] - Use soft inversion instead of hard inversion.
14 Options: [-I <file> | --stream_in=<file>] - Read input from stream file - Default=STDIN
15 Options: [-O <file> | --stream_out=<file>] - Write output to stream file - Default=STDOUT
17 Examples: ... | $script - Invert alignment in stream.
18 Examples: ... | $script -s - Soft invert alignment in stream.