3 source "$BP_DIR/bp_test/lib/test.sh"
5 run "$bp -I $in -p SEQ -O $tmp.1"
6 assert_no_diff $tmp.1 $out.1
9 run "$bp -I $in -p SEQ,COUNT -O $tmp.2"
10 assert_no_diff $tmp.2 $out.2
13 run "$bp -I $in -P $in.pat -O $tmp.3"
14 assert_no_diff $tmp.3 $out.3
17 run "$bp -I $in -p SEQ -i -O $tmp.4"
18 assert_no_diff $tmp.4 $out.4
21 run "$bp -I $in -p SEQ -K -O $tmp.5"
22 assert_no_diff $tmp.5 $out.5
25 run "$bp -I $in -p SEQ -V -O $tmp.6"
26 assert_no_diff $tmp.6 $out.6
29 run "$bp -I $in -p SEQ -k PAT -O $tmp.7"
30 assert_no_diff $tmp.7 $out.7
33 run "$bp -I $in -r a -k SEQ -O $tmp.8"
34 assert_no_diff $tmp.8 $out.8
37 run "$bp -I $in -r a -k SEQ -c -O $tmp.9"
38 assert_no_diff $tmp.9 $out.9
41 run "$bp -I $in -e 'SEQ_LEN<10' -O $tmp.10"
42 assert_no_diff $tmp.10 $out.10