3 source "$BP_DIR/bp_test/lib/test.sh"
5 run "$bp -I $in -p SEQ -O $tmp"
6 assert_no_diff $tmp $out.1
9 run "$bp -I $in -p SEQ,COUNT -O $tmp"
10 assert_no_diff $tmp $out.2
13 run "$bp -I $in -P $in.pat -O $tmp"
14 assert_no_diff $tmp $out.3
17 run "$bp -I $in -p SEQ -i -O $tmp"
18 assert_no_diff $tmp $out.4
21 run "$bp -I $in -p SEQ -K -O $tmp"
22 assert_no_diff $tmp $out.5
25 run "$bp -I $in -p SEQ -V -O $tmp"
26 assert_no_diff $tmp $out.6
29 run "$bp -I $in -p SEQ -k PAT -O $tmp"
30 assert_no_diff $tmp $out.7
33 run "$bp -I $in -r a -k SEQ -O $tmp"
34 assert_no_diff $tmp $out.8
37 run "$bp -I $in -r a -k SEQ -c -O $tmp"
38 assert_no_diff $tmp $out.9
41 run "$bp -I $in -e 'SEQ_LEN<10' -O $tmp"
42 assert_no_diff $tmp $out.10